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Mouse element [ mm2126 ]


Position: chr9:63,644,965-63,649,683 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTTGTGCCTAGGCTCCATGTgtgtgcagaagccctcggagctcagaagagggaactggat
cccagagaaccgaagttacatgaagtcgcgtgtaacttcaggtggctgtgaattgccatg
tgggtgcttcgaactgagcccagttcctcaagggcagtgcatgctcataaccactgagcc
cgtgcccctggcccgcccttcctgctcttttgttgaatgcactccattacccaacccctg
agatctcttcctcctcatggcccccttccttataacttatacacgtgtgcatccatcgaa
cacagttaggtctggatcccacatctgacaaaataacaaaaaaaacatgtgacatttgtc
tttctaaagctggcttcctttgattaacaatgctctccaggtctcccactttcctggaaa
tctcgtgacttcatttttatttgaatgaataaaattcccttgcgcatatgaaccacattc
tctgtatccattcttctgctgatggatatctaggctggctctgtttcctggttgaatggt
gcagcagtacacctggatacacaagtgtccccattatagcacttggtggcctctacaccc
aggcgtgccagaaaagagttatgtcatagacctagtcttaattctttgaggaacctgcat
actgatttccatattctggctccagcagtggacatcttgccaaccgtgtgcctgattcct
cgtttacccacatcccatctttcctttcggtgaggacagccattttaactaggtcagcag
gattcttttaaagcagttttagcttgggtttccttggtacttgaggttgctaaatactta
aaaggtatattactggccattgagaaccgtctgtcttttagttgactattttacttcgtc
gatgatttgtgccttagcgttggtttttgaagttctccacatgatttagatgttagccgt
gtctggcacaccgctggcaaatgtcttgcctggttggtagtgtgcctctttgctgcttgt
ttctttcgctacacagaagctttttaacgtcaggtaataccatctgtcttcccacgtgat
cagagtcctttccggaacattcttaacctgtgcctatgttttcaagtatctcctgttctc
taggagttatgacattttgggtctttaaggtctttggtccctcttgaatagttggccctg
gctgatgccggtgtttagaaggtggatggagtcttgctagagaaaatgggtcactgggag
tgagtcctgagtggttgttttatttttaattgttatttattttaagcatgccgtaacact
catgaggaagtctgaagacaactgaccaaccagcctgccttcatcttaggcttcacagcc
atcttatagtaaagacaaactaggttcattccagtctatgattaaatctgtttctcaagg
actggacaatggcctacttgaaaccttaactacaaatagttttatactgcctgatccagc
catgtctttgtttcagaagattattataaccatgtcgctataaccatgtctttgattcag
gaggctgttatgaccaacttgttacacttatgttctgtttctgtaaccgcatcaatttgc
ctgcctaatcccccatttggtaaccctgaactataaaagcccttatcttcttcatgtcca
ttgctgatctcttaaatcccaccttttgggagagacagctcacgtacaccatgcttctat
ttttttaagtttcttcccttgggatgttcaccagacacacactggacaagaaaggatgaa
gcaaaatccaaaacaggtgggtcagaggatcctaggggtggggtggggagggtctccttg
gaagatttcagggttatagcccttcaatgttacagctcttttagaaaatagctctcttaa
acaagagtcagcagaaaaaaacttgtgtatgcacacttaatttgtgatgaatcaagggct
atatatatgacccttggagagtgggaaggggttcttcttagggtgaagtttcattgagga
tgctgaggtttaagtttctgaggatgcctcatttgcatggagaggcattccaggaagttg
aacctgtaattacatgacactcctcaggtagagactgacagtcagtttcccctgatcagg
cagagaagaagccctgctaaaaaaagggagtccttcattttgcacgaagctcaggaaagc
tgtccagacatggtagattacaaccttggtagtgaggtacaagagtacatacatttaaaa
agcttgctttaaatggtttggccacgatgatttgggttgatggcccttctcttctcacct
gtgggagtaacacaacttgcctaggtctgcccttccatccacgtgggtccaagggattga
actcaagccatcaaacttggcagataggcagctttacctgctgaaccctctcgatagccc
cagccttgaggtcttatagccctacccatcttcttcttcttttttcttttttctttttct
tttcttttttttttttttttttttttttttggtttttcgagacagggtttctctgtgtag
ccctggctgtcctggaactcactttgtagacgaggctggcctcgaactcagaaatccgac
tacttctgtctaccaagtgctgggattaaaggcgtgtgccaccatgcctggcctctgccc
aacttcttgtttactgtttattcctgactacagacacacaaggaaaaggagaaagagaga
aagagagggagggagggaggaagaaagggagaaaagagagagagagagagagagagagag
agagagagagagagcgcttgagggcaagcaggtgggcaggcaggcgttcctgtctgggtc
tgtggccctattacagcagggacctgtgttgatgcccatggtctgcattaatgctaaagg
ccgtgtgacgtctctggtctggactgctacctgagaccatgttgatgtctgagagccaag
ctgagctggccccaccccccctacccactaccccaagatggtgccagaaatgcaggagaa
ctggtcaagaggtagtccagccggctgcctcatgtgcccttgcctgggcaacccaggaga
gctagccctggtaccagggcacaggagaccctgtaggctgacaaacatggccaccaccta
ggcccagatccagggttttgatttggctcacctcaacatctatgccaactatgagctcct
ggaacccatgaaagggtcctgcagacccaaagctgcagaagctccatgacacagggcaac
aacacggcatctgagaggagtcccagtgaggatccagtattgtagcagaagccagaggcc
tcaaaccagaccaatgattcatggcaatgagtgcaagaaaagctgttttgacaaaagggc
atactgtgtgacacactgcgacacactgcagcttccacagtgagattttaaaaaaaaaat
cattgttgttatttatttccaattctttctactttctagccctggaatagtggcaaatgg
tgtgttccagctttctgaatcggagctgtggcccagcagggctgcaagctcagagaaggg
tctgaggggaccgtgggatctgtctgctgacttctctctgaaggggagcaggcgctgctg
gccccacccctgatcccctcccctccatgtattccgggtctgaaagtgagctcacccgag
ctaatgctggagctaaccttagtgccacaggtgactgccacagtatctgcctgagttctc
cacagcagcatgcacaggcgcacaggccaccacgggcagtagcttagctccacacagggc
cttttcaaagatggaggcttctctgctcatcttcaggaaaaacaaaaggaggaagaaaag
agaggagtagtgggcgtgactgcttccattcctcaactgtgccttctgagtagcagcagc
ccctccatcccactgtctgtccactgtcagcctctgtgcggacagccacaccctcgcagg
ccaatagctggttgtcttattagctacagcagaaagctggtcccgaatgcgacccagccc
gtctaacaaggtatccagagtctctttgctcagctccatggtcacagccgagatggaggg
tttctctccacacagactaggatcctcctagatcttcatctggagcaggcatatggggac
agccattcggctgatgctgtcagaggaggttttgctatccacgctccagtccaggtccac
cgggcgtggccgagagatctggtttccttgggcttcggtttgccatgttgatatgtgctc
caggatgatttttgtcagcaggttttgaggtttgggtggaaactttctggaaagagagcc
agaatcgcctcagcagaggacaggccacaaaggccaccagcctagtggtgcagagtctgg
agcagttgctctgcctcctcctgggtcacagacaagctggaacatgtattattgaggagt
tttttgttttgttttgttttttttcagtcaagggctgaactggagaagttttctgggcat
agtggtctgatgacatcttttgaggaggccttcggcagactctggagcaccacaaaatgc
tccgcagtcagggccgccatctttctggagtggagatttttttatttttaattctttatt
tttattcttttggtggggtGGGGGTTACAAGGGTGAAGG
Primer
(+)gttgtgcctaggctccatgt
(+)ccttcacccttgtaaccccc


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