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Mouse element [ mm2125 ]


Position: chr9:63,631,765-63,636,413 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGTCCGAGTCCTGTGCTTTggggagactttgagtaaacaacagggctcagcaatttggc
tgggtgcatggcatgggttgtcagggttaaatcagaaagacaatttgattcccaatttga
aaaacctaggatgtcatgttgaaaaggtacctagagctactagggagccattaagtgttg
agagtcatcttgggggaactcagttcaggtgattgcctatttacccccaagagatggtaa
taatgctcttgctaagtattaacttgaagagttggttatcatgtccatttgtgcaactgg
ttcctcggttggtattaatggaaagaaagtaaggggttaagcttttaaaggtattccaga
atctatgtctgcttgtatgtataggggtgtgtgtgtgtaggggtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtaggggtgtgtgtgtgtgctcctgcatgtgtacatccatgcatgt
aaaggccagagatcaatgtcagatgtcttcctgaatgtcaggtgtcttaccttatctttt
tgagagagggtcacttactggcctcaccaattcagttagactagctggccagggatcctc
ctgcctcctccccaccagtgctggaattatggatgtgtgtctcctgcccacttttccctg
gtgccagggatctgaactcatatcttcatacttgtggggcaaaccctttacttgactgag
tcgtctttccaaccctacctcatactgttaagtctattctctttagaacagatgaggctg
gactctgcccacaggaatcaggaggcccagcagcagcccaagcctggcacaaaccatgga
cccagtgtggcactcacttgagccactggttaaaattctcctaatcattcatgataaatc
tggatctcgtgttgtttttatagcccagctatcgaccttttgcttcaggccaaacttctg
cctgcctggatgcctgtttccatccccaccccagtacacacactcaagagcacacacaca
cacagacacacacacacacacagacacacacacacagtcacacacacacacacacacaca
cacacacatctcagaggggagacaatgtagaaggtgcctgtctttgtgtttccaggttct
ttcagatgttccccttctgaaggccagacattggaaatgtatttttccaccaatatggta
tgaagcagaaagccgtggacacaggagacatgagttaatgaaactgtcgggcaatggggg
ctccattaataaggctccatttgtttctgtcctcttggagcagctggttattaaaaagtg
tctgagctgcttttcctgcctcctgatggtgatgaaactgggcccggctgaagaggctac
agaggcgcagcctggtcatcaataaccgctggtcaggatggagaagacatggcccaggcc
ctgatgagcacgtagttatgggtccttctcctgcttcaccagccaaatgcaaggagctgg
ccagagtcagggcacattttccttgtcatatctatatctaagttccaccaggaaaaggtg
gatgtcttctggcacattgaagaggttttgttttaattggcaacacccaggggaggccac
aggggttggagcacccccggggtcagattgtgtatcactagcaataagctccatagtgtg
agcaggaagagtttagagtttctctaactcggctgtgtggctcagggcagatagggttgg
cgctcttggctttgttatctatctttacaggaaggggcggcctgtggtctgcaggtcatg
aaactgaaacacagcaatcacaacggggctctcctgttccactgtggagccaagaaatgg
ggaggagtgagttccctggggggggcatcccctacatcttcaatggccaggatgcattta
gaggagatctgagactggacactgggaagtgttgggagtaagggacaacctggtctctca
gtctctccccagacactttcccattttccttcagtctttgaactcagagggagcatcttg
ccatgttctccccttcccacactccacattaccatctagcttccttgttcctgtgacact
tgcccccaggccctcaggataaaatgcctcaacacaccagagctgagatagaccctggtc
tgttgtcctgggagacaaacatgagttctgctctctcatagttctcagccccatgggtcc
agctgtgtgtccctgagaaagctaattaacgttcctgaactcagtttcccgtgaacctga
gaggcaccagctgcatcccagggagctctagctgagtggagcacgcccctcccaggcacc
tcccttccacatccaaagcctgccgatagagaggctcacacaacaccactcaaatacagc
taaagttgtgttcttttctggatgttattgttaagatctctgaacacctgctctcagcac
accctaccttcaggagaggggcctctctcaaatctcctctggctcccacagagtttgcat
aacactccccagcctctgcccttgaagttctgttcccatgagggggttgggagaaccaca
actcctcaaacttgcagggaaatttctagcaagtcgaatatgtcagaggacagggttgtt
gttgagtccctgaaactgaaccttgaggtgaatttgacaattgtgtgggaatccctgctg
tgctttcagttgcaggacaatgggggccatttgcaagtttgaatgtggaagaaaatgtct
ggttcaaaacacacacacacactggtgcacacacacatgtgtgtgcccacacgtgctttc
acatacacatgagcacatatagacatacacatagggaagcaggcacacacacatacacca
catgtggacacacatacatgtaccacacgcatacacacacacacacacacacacacacac
acacacacacacacgcatgcattcatgcatgcacacacagaggaatacataacaaagcac
cttaatacataatacataataagcaaccttaactccatgcacactcagcctttctattag
ggaccatgagaaataagaaaacacaggccctgtttgtaggatcataaactgctggttgta
agggaaggaatccgagaaggtaagtaacctgattaagttcacacatccattgtgtgaaag
gcatcaaagggactaaaatcctggtgacccaactgcagaattccccagctccaaatgaca
ggactaagaaaaaaaagttctctgcctgtctgaaactctaggacacagaggggaagccac
tcccaccaaaaggtcagagggccccaaggggcagatggttttaataatggccgtttgggc
caccagatcctgtgactgaagccaaagagacctcagagtcaggggctcttcaaggacatg
gtcccagactcacagtggtcacagaagtcatgaatgaggggcatcccaggtacacatgga
gaatatgctgtgcagaccaagtatccaaggggtgctgagacccagaaaggcaggcagagc
aagtgggacagtgagagtggccagcacacgcactctctctctctctctctctctctctct
ctctctctctctctctctctctctctctcacacacacacacacacacacacacacacaca
cactggagacagggctgaagccactgtcacccccccacaggctcccctaggaaaagagcc
tctgctagctctcttgctcactatagcacaaatttctccagggagcccatctgcctcgtg
gaggcggctggctggcctgacttcatcttgttcccctttccttcttccctgggccagagt
tccagatccatgatccttggctccacttggatttttcccaggacaggaacccagggaggt
tgtgcagcctgcatagcaccctacccagctcccacccagagacagtgagttccagagcct
tgaggggaaggccccaccccttcataaatagccatttcgactccctccatgccctatggc
ccactcagttaaaaccaaacactccacagtgagggcaggaagcttcacttctgtcttcct
gccctctcctgccctggcccctctcccacctattataagactgaagagctgaggacctcg
gtgtgcctctgggccagccccgtcattaatagggaacagaacctggcttccccatctctg
gctgtgccttctagaccagggacctttggcaagtacttttactcaaattcatgtaagcca
catttcctgggaaccttgcaggtattttggagctactggatgaatagaagacaagtcctg
gatgatggatggacttacactacaggtggagacacagaccataaacacattcaccaagca
gcagcggaatgaaggatgtagctgaccaaagaaatggcgtgtggcagacacagcctctct
acctcaccgacacatagaaaaaaaaaaccagagggagggggagaggagaatgtgaaggca
tgcacaaaaccagcaagtgcgaaggtcctggcagccggagtttgaagagtgagggagaac
accagagggtaagagcagagagatgaaggggacgcatcacgcaagcctgcacttcagggc
aaggggtttGGATCTGACCAAGTGTGGGG
Primer
(+)CTGTCCGAGTCCTGTGCTTT
(+)ccccacacttggtcagatcc


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