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Human element [ hs2124 ]


Position: chr1:11,940,877-11,944,112 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: NPPB - KIAA2013

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTCCAGGGAACTGAAGCACTtattccaggacatttgaccctgcagcctggtccctctctc
cctccctcccgcctccatctttccccccttccatcttctgtgttcagataaacaccaaga
gccttcaaagagcccccgggaaataactcagtttcttgggcacatatcagctgccatgaa
tggttctacacactgaagtccattatctcagtgactgcgaggactgaatgagcacagcct
ggagctgagtcagtgttccataaaagttggctcttatttttattatactggacacagaaa
ggccagatgccttccccaaagcccctccctgtgggtggcagtggcccaggaagtctggca
ctaatgtcagtgctgtcacctgccactctgtcctcaagggcctctgggacatgctgggaa
ggcaggccgtgagccagatgttgcagagctgggccctgagacgctgtcccttcagtgacc
tttcctgtccagggcccacagcggaagctgacatgtgtgctgcccctcccctccgctccc
ctcccctccccaccccattctactctatgggctttggtgggaaaaaaaccagggccccat
cccctgaggcctaggccagtgcagacatagacctcgaactctgcccaacatggatggcct
ctgcccaggtgtgggagaacaaaggcaaggaaaggctcaaggaacgttccaggcatcagg
aagccaggcttccccttcagggctgtcgagtgctcaggtttctatgcctgtcagtcacca
acacttttgcagtgggcagctactatgtgccaggcacaaagggtaactgggcacacctct
tttcttggaatgggtcagaggttgtcatcaaggaggtgatgtttaaactgagctcagggg
aataaggaggagccagggttcggggaagagcatcccagcagaggacagagccaaagccag
cgcttgaggaggcaggggtggaaggaatgtagtggtttgaggagccctggcaggctggtg
gggctggagagggagggtaggtgggctaattaatgccctcgcaaagacgtccactcccta
atccctgcaacctgggaatctcaccttatatggcaataaacagactttgcagaggtgact
aaacttttgcagtggtgactaaattaaggctccggagatgggaagaccatcctggattat
gcaatggaccctaaatatgatcacaagtgttcttattatacaagagggaggcagagggcg
acaccaccacacacagaagcagggaaggcagtgtgaccacggaggcagagactggggtga
tgcggccacaagccaaggaacacctggagccaccagaggccggcagaggccaggaagtat
tcccctgacagcctccagagagggcggccctgccacacctcgacttcagcccagggatac
tgattttagacttctggcctccggagctataagataatacatctgtcttgttttacgcca
ccgagttgttggcaatttgacacagcagccgcaggaaactcatacagacgcaggaggaga
gcttcgagacggtttaggaaactcacatggagggcagctcgaggagagctctgagacagc
ttaggaggcagctggggaaagggggaaggggctggattttgttcttagtgcttctccatc
cccctctcattcacctcctcctttctcccctcaaagctcctcagcccttttaaaataatt
tcacttgttgcagtaagcaggtgtcagtttttgtgaaggtatgaacacgttttaaaacct
tgcggaaggtcgaggctgcagtgagctgtgatcgcactactgcactccagcctaggcaac
agagcaagaccctgtctttaaaaacaaaacaaaacaaacaaaaagacaaatatatatata
tataaaactcagagacatttcctttaaaaataaaataaataaaatctctggaggagaaac
aagcttctgggcccatctcctcctccctctcctccctgccatctctcctctcctcaaatg
tccctgcagtgtgaaccccggccttgaggctgggagcagggaggccaagagaggaagctg
tactccgcctagctcctggctgtcagcacccatggctggcaggattgccacaaactctgg
cgctctaaaggctgataaagccccacagcctgcacgtctggagcctgggcctccagccct
gataagctggacctgtcagcaccatggccacacctgctgtaggcagtgagcgccacccgc
ctcccctggccactcccactcacggcttcctgttccctgtgcacagccaagccctggcca
ccatgcctaggccacccctccctggatgaagaacaaagtggagtggccatgggcaagcag
atttgcccattacatttcatctctgcatccccccaaccccatcccgctcttaagcaccag
cgctggggatcagaagacctgggagattcaggataggggtgctggagcccaccaggcaca
cagttccctgaggaagtcacatgggccgatcacacgcagagcatgaagtgctgtcagcag
ctccaacacattcctgggattctccagcccaccccatgtggccctgaggggagtgtgcaa
gtgcatgggggctgagagcctgggtcattgtcacggccaagcaggaagcaaactatgaga
gtctttgctccagccgggatcacctgtgcccgcacgtgagtgggtacaatgttctccatc
cctcgcccgggaagtcatcgttcatcaagcctgggctacttcccgtggtgtggaaaacct
ccactcaccacagcccaccaagcgggctccaggatggacccagtctgccggctctggtag
gagagttagaaaggcctcttggaaaaggtgggcaggcagccagggacaggcacccctaag
agatcctccagggctcttgctggtgagggacccgctcgcccttctcaccgtcctgggctt
agtttagcaaacacctgttcacacctaccatgaactcaccactgttggacgaaggcgacc
cccaaatgtccctgccctcgaggaatgtgtagtcaaaacagagaaagaccaaacatgttt
tgtcgggttttttgctttgtattttattaattacaaagcccagatgtcaccaagtttccc
accaaacctcagaaatcagtggtagaaaaataacaaAGTAAGAAGCCCCAAGCCAT
Primer
(+)CTCCAGGGAACTGAAGCACT
(+)ATGGCTTGGGGCTTCTTACT


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