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Mouse element [ mm2123 ]


Position: chr9:63,622,669-63,627,542 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGGTCTTGCCCAGGTTAGGccagggttacagtatgagcaggtttccccgtccctgggta
atgcccttgcacataactcacacatgaggaacgaatgcggccatgtttgtgcagagttta
tttagataagaaagcagcctcagcctcctgggaggggccaccgcagagggcaaggcacaa
gttagttattaatcaccatctgcaggaaggcagagttcttaaggcacagagcagcagagc
aggcacagtgctagagtcaaaggcctgtgtccaagtccccataaatgccaggtagggtgg
tggccagcctgtcattccagcctcggaaggcagagaggagtcccagagcaaactagcaac
agagtctacgcatatgggtgagctctgagtttgattgagagtccctgaatgaggtgcaag
agcaatcatggatgactcccaacatcagggctccacaggcatggctgactccatgtgcct
gaaagtgagggctaaaacatagccttaaagctcaaaactgagtctgctctggctagaagc
aggtgtgggcctagatccagggcctacccacaccacagttggccacccacccacctcctt
ctctaatcctactcctcagcaacccacaaggtgcctcctctaagctctgcttagaggtgc
acccaagccagcctccatctgtggggtacacaccccaactatgttcttacaaggaggagt
ttgtgccaatgttctgagaagctgtgactttaagggacactgggaacaacccagatgtca
atgcatagcgtcagttgcagtggtgcgtgtacatggagcaactttgaatgtgaaagtgaa
tgtgggagccaaggtgagcaactaatagacaataggtcacatgatttgaccatgtcatgc
aaaggtcacatgatctgaccatgacatgcaaaggtcacatgatctgaccatgtcatgcaa
aggtcacatgatctgaccatgacatgcaaaggtcacatgagtggaccatgacatgcaaag
gtcacatgatctgaccatgtcatgcaaaggtcacatgagtggaccatgacatgcaaaggc
aagctgaggggtatgggcgttgggtgaagtctacatagatgcagaacgattgcacatgtt
ggacggcacagtgagtatgacgttggctgtgggaaacaacaaagcttctagaagaaatca
caggagaatatctataacgttggggagggccacgttttcctaaggcaggcacaaaagagc
acaaactgtaaaataatgtcagtaaagtggtcttcattagcactaagaactattcatggc
aaaaaatatatattgaaatgaaatttgcaatgtttgtgtttaaaaatctcatccagtgct
agcatggtggcacacgtctttaatcccagtacttgggaggcagagatctctatacattca
aagcaaccctggtctatatatcaagtttcaggacagccagagctatacacagagagagcc
tgtctcaaataaacatacaaacaaaagaacgctccccagactatacaatagatttctata
aattaataagaaaaagacccccctttgggagggggcaagcatagtagagtatgcctttaa
tcccagcacttgggaagcagaggcaggtagactggatctctatgggttcaaggtcagcct
ggtctacataatgaattctaggacaaccagagcttcttagtaagactctgactcaaaaaa
gaagaagaaagaagaagaaggagaagaagaagaaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaagaagaagaagaaagaggaggaggaggaggaagaa
taaaagaaaggaaaaaaaagactcactttttaaaaatcaaaattaaatggcactttataa
aagagggcttttatatgcttatccaagggctgccaagcatataaaaaggtgttcaacatc
attaaccagccagaaaacacaaagcaggcaaaaagccataccactacacagctatcaccg
tgagtgaaacctaagccaataacaacattggtatcaccaaggatgtggctcaccaaagct
ctcagatgtcaccagtggaactgggaaatgtacacacgttagaaaactgcttgactgtgc
cttctactgacacttgtaaatgctcaccagcaaatgccaacattaacaaagagactgagg
gctggggagacggctcattggtaagatgcttgctatacaagcaggaggtcatggatagaa
tcaacagacacacagacacacacagacacacagacacacacacacacacacacacacaca
cacacacgaggggagccaatcaatgaaatggctcaacaggtaaaggtggaagctgtgtga
gcctggcaacctgaggtcaatcttcagaagctatggaaaagcagaaggaagaacacactc
cacaaagttgtcccctcatcgccacatgcaggcctgtccacacacattatcatcatcatc
ataattaataataatgatgatgatatagtagtagtagtagtagtagtaataacttaaaac
tttaaaaaaaagtggtaaatttcccaggttgacagttggccaccacacatgtatctgctc
acatgtacccacacacacacacacacacacacacacacacacactcgacataggaataga
cactattaagttcttgattgaacatcactttcataggctgacaatacagcccagagggta
agggcgcttgctactactccagaaaactcgagtttggtccctgaaataggatagaaagag
agaaccagctcctgcaagtaaccctctgctccacatgtgtgctgtgcccacatgcacaca
cacatgcacacacacatatgcacacacatgcacgcacacatgcatgtacatacacaaaaa
taaagactgcctccatgagagtgtgctatgtgggttaagaaattcctttacacagacgaa
gcctatggaccagacagacttaacttgactttcgtgtatacagactaggaaaggatcctt
ccagaagccccacgtggataatgagagagcacacccatgttcccatgaaataagagaagg
ggtgtggctgaggcagaaggtccagtcatgtcagaacagaggagaaagaatagggccagc
ctggtagggtagagttggatggtctagtggacagtctaggaatccggtccaaattctccc
tctaccaccagctagccttgtgcccttgggggacaacactcaacctttcccgtctcagct
tttctttttgaatagagagaaatggtctgacccatgcataaaagctgcctggtgtggcag
gtgctgcttaacataatttttagtccctcgactaaaagggacacaagatgtcccttttag
taaaaggggcacagtgagtgctcactgactccacctcagcagacactgcaagagcccaga
ataacacaatgggtgccaagtgcctccatgttcaaaagtaagggctaggtattcagtgtg
gggtgagcacatcccgccagcacttccgggataacaaagacaggaatgtaaagaagatag
tgatgggaaatctttgaaagacttgggaagtgtgtggcagggtccctggacacccaaaga
gaagggaaaaggccttcaaaggctcctcagagagctgctgtgtgaccccagaatccgtga
gacacaaagattatctggctcatgtctagaccagctggagcaggatctggggctacccca
gaaggaagggcactatagctgccccatggaggaatggtttgctaaggaatcctggactaa
attatattacttatgacccctgggggtagcgtaagcctagggaggctacaagcagtaagg
gagaggcagctatagagggcacagcagctaggtacgtagaaagaagctgtaccccaggga
acgcccgtgcaccttgagtcagtgtgtttcctgtgccaggaatgaccaacctatagtagt
gtgtgccatgttcctcgtgagcacaggttatgctgcttcctgggcagcactgggcctcct
ctcagtccaagtaacaccttccactaccaggaaggttttaccaagagctggaagtcaatg
tggggattggagacttctctgaaaaacgttgctcggcttccagactctgccctagcccca
ctacagtctactgaacactcctgtttggaactccagcctgacctgcggaagcaactgctc
tgtgaagtccagggatgagcagaggttgggagattcttctcttggtttagctttgaataa
gagaagggagttgctgctattggcatcttctatagagcaggccctggtgcctagctagtg
ttttgtgtgaaccgaccaatattcccaagaacaatcacactgggtggatatttgtcattt
ccagtttacacgggagaagaaagacgtccaaaaagataagaatgtagccccacagcccca
gagtgtccttgaactctctatgtagccaagacagactttgaactcctggtcctcctgtct
ccatctctcacgtgctggggttacaagtgtgcattgccatgctcagtttatatggtgctg
gggattgaactcagggctttgtgtctgctaagcaagcaccctagaagccgagctgcagcc
cccaccccaccccaccccaccccacccccagagatggtgtcctcttatagcaccatttct
gactggtggcatacactgctgttgagtgacggggccaggcccatgtgccttatttctacc
ccttgcaagccacgtgcacctaaaggggctccttctctgaccttgggcttcttaCCTGCA
AGAAAAATGGCCCC
Primer
(+)CTGGTCTTGCCCAGGTTAGG
(+)ggggccatttttcttgcagg


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