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Mouse element [ mm2122 ]


Position: chr9:63,595,979-63,600,734 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3(intragenic)

Timepoints:
e11.5

Reproducible staining in unidentified abdominal structure.

Expression Pattern
forebrain (2 out of 5 embryos) 
midbrain (mesencephalon) (3 out of 5 embryos) 
other (5 out of 5 embryos) 
tail (5 out of 5 embryos) 

Embryo 2

Embryo 3

Embryo 5

Fasta sequence
TGAGACCAGGGATCTCCAGGgtgccctgctggtgccatcaccaaatgtccttcttgagaa
tgaaaaggcgaatttactgaacacatactatgagctacacacttgggctaggaacctggc
ctgtctcagctcactcttacgtgcgatcaacagtcctgctcccatttttcacacaggaga
actgaagcaaaagatatgaccaaggccattaggctccatgcagtccttctctctgctgcg
ttataatgtcccagcttcctctcccacttcacaagtggcatatggcacacccattaggga
acagagaaatgaccacaaagaaatatcttagagaggtgcagtacacctagagtccaggcc
tggtcaagctacaagtctctctaccagagaggcatgggagcagagaaaccctggtatttt
gcttcagcactctatctgacagttaattgtagctagggggaaaaaagaaagaaagaaaga
gacacatagtcagaaaagagaaaagaaaagaagggaaaagggaaaagggaaaaggggagg
aaggaggggaggggaggggaggggaggggaggggaggggaggggagaagagaagagaaga
gaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaagagaaga
gaagagaagagaaaaaagagctctttctggacccattactccacgtttggctcagcccag
aggtgattttttaaggaaaaaatgccttttggcatttttgagctgtaacagtgtcaaaac
agacctttaaaaaacacacacccaaaaagcattactattgtcaaaagttgtcaaaagctt
ttaaacaccacacacacacacacaccaggggcccctctgggccacagttggctcagtacg
aagcctggcggcaggagcagtcagatgggtaactctgtttccaaggcaaacctgtatgct
gctttctaaacagtgctcgccctaaacaaacgcccagtggagcacagagaacttgccaga
tgtgagtggggaaagccttgggacacagaaaaagaatgaactcaaactcgttttccattt
cctagatggggttcaaacttgtaagctccctgctccctctgcttactgggggtagtgtct
gtctttgtatagacagttgaaaataaataaaggaagcttcgtgggtaaacactgacagga
gcaaacactcccacaggtatctgcgagaatgcccacctctggtagctcaccgttttttag
gcatctgtggtcattaaagtcaacttcctgctccaagaatagtcaaaaatagcaacaaag
gaaggcaaaccgctcactgcctctgaagacacacagtctccgggcttcatcctcgtgttg
ggtatttttacactacacgcctttgtagttcaagtttgccgatttagtcaagggtagcca
gggggccaggagggcaaggggaagaggagagccacaatctaaagacggaactccaaagtt
gtttactcgcttttataaattaattggcactggactgatgataattaaagaagattcatg
attcaattaatgaaccagttgtacaccaaaaaaagaacttctaaattggggctagtgaga
tggctcagtgggtaattggtgcgtgacaccgagcctgacgacccagttcctgactaccag
ggatccacgcagtggaagagagctgacaagtgatcctccgacctccacttctgcacctgt
ggctcgtgtccccacacacacacaacaaagacagtacaatttttaaatggcttcagaaac
ttctagaatgcctatatgaaaaatcaaagcagagtccggagaaccctccaccagaacttg
ctacctagactataccagctgagaacaactgagatgcagagaaattaagtcaaaaacaaa
gcaaggtttagagcccctcaccacacacacacacacacacacacacacacacacacacac
tctcactaccctgtgtcagtcacgcctgcttccaaaacaacctgaccaagtgcagtaagt
tagttttctttgatagcatttctggagtctgctaaacaaacttttagctgggtccagaat
tagccagacttcttaattaatggcttctactgtgttttcaatttaaactgagtctctctg
tcaaaacattgtgtgtgagtagtagtgtgtcactgtggcaggcagctgtttgcagtcatg
ccactgaggacagaggggcttgtccggcagatacgttatttctcacactgtgaagtaagt
caacacagaataatgtgtatgctcgcgctctctctctctcaacaaacacacagagagaga
gagagagaatctttgtcagcagttaatccatttcagagttttgagggggactggtttctt
agcaccaagcaaattctatttacaaattagctggagataaacgcacacaacggtcttacg
gctcccaaggagccatgtttaaccagctggcagatgggaagctacagagggaagcaaagg
agctagccctctttcctcgtcacgtcactgtcacccagggcacggagagagcacctggca
gcttcactgaaagcaaacagaacaataaactagacaaggcctcctagaaactcctttgtc
cctgaaaccacattcctggactgcagagcaagctcagagagcaaaggcatttgccaccaa
gcctgacaactacagtgtggtcctggggacccacttggtaaaaggaaaccactgactccc
tcacagggaagatggagaggctgaactacaaggccttggaaagctggtccctccaatgct
caccagcttccagttccttcccacaccacgcacacagcaggatgcccctgccccttacct
cctaccccaggagcaaccttgccactggcaacactatcagactcggacctgggaaaacaa
gtcaggttgtattcttttttgtttggttggttttggtttttgtttttttcgagatagggt
ttctctgtatagccctggctgtcctggaactcactctgtagaccaggctggcctcaaact
cagaaatctgcctgcctctgcctcccaagtgctgggattaaaggcgtgcgccatcacacc
cggctcaggttgtattcgtggttttgtgtttcccagctgtcatagttcatcttgattgtc
aaggtgatgaaattgaagtcaccaggaaaacaaagctctggatatgtctgtaagggaatc
tctcggttgggttcattgagttgatgggacccactcttatctgtgggccaatcagcagct
ttcacccctttctgcttcctgactgtggatgccacgtggccagccactccaagctcctgc
ttctatggctttcctgccacaataaactgttacctgaaactgcaagccaaattaagtcct
tcctccctttccgctgatttgtcagggtatgtttgcacaataacaagaaaggcggttaat
acacccttcaagtacagcaaaggagacaggaacagaagttaactagatattcaagaccct
gttgctttccaccttggaagtgtgactcttaagagggggattctggaagacgaagagccg
ggagaaatgccttaacagaatacagtctcatttcaaatgagccagccctgcccagtccca
tttattccacagaggcacactgagaataatggctgtgcagcgcagcaaatggcattaaaa
tctcctaataaattactaggtggaaattaatagccattcagtccattaaattgtgttaat
tttatttccattataatacagcagcaattgcaaatttacattattaagccaatatttatt
tttttcaaaaactcattttaattagagtcgggatgtgataagctcaaacctaattctctc
cattgtcatcaacctcttgcatgtctcatcaaaactgaacgatgacttcattcatcactt
ttttttctatcattaaaatagtcatttaaatgtttatgtccaggcccttcaaggtcctca
gcaggtaaactctcttgccatatacctgacggcccgagttcaacgcctggagctcatggt
gggaggagagaactgactttcagaatgcatgcaccctcacttgcaaatacaaagtaaaat
aacatttcacaggctagaaagatagctaggccatagagaacacatgtggctcttacagaa
gatgggagtcaggctccatcagcaggtgggtctgctcacaactgtcactctgtctggggg
tgacacccctcctggtgcctgtggacgctgcactcgcatgcatacacacatatgcacata
aataagcaaagctctttaaagtccttgcagagacttctagaagagatcctaggaacactt
cccatgtcttttcagaaactggggttcgcaggattttctctgcccagcatgtgattgaga
gatgtgaaaagctaagttgcaccaaaaggaaaggctgagcaacccacagtccgcagctcg
cagctcgagtccctgctcacaccgaggaaaacctgaaattcaggtttgtcacactaagtt
gccctttacttcaaagagaaaacactttatagttgggtcctagacaagcactcagctcac
aggcccttctgtacaagtgacaggtaagagagtcaccgcagctgtctgcctggcaaaagc
ccagcagataaaggtgtcatgcaagacagctctcctcaggttccaacacacatataAGCA
CGCACTCAAACAACAC
Primer
(+)TGAGACCAGGGATCTCCAGG
(+)gtgttgtttgagtgcgtgct


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