Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2121 ]


Position: chr9:63,587,103-63,591,784 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGTTTATGGATGTGCCGGCTagtttttatgtcaacttgacagaaagctagattcattttg
gaggaaaggatctcagttgagaaaacgttcccaacaggttggctggtgggcaagtcggtg
gtgcattttcttgattggtgactgatgtggcagggcccagctcgctggttggcctgggct
cttctataagaaagcagactgagcgagctgggagaagcaagcccagatcctgcatccagg
ttcctgcctagagttcccgtgctgtagaactgtaagctgaaataaactctttactcccca
agttgcgtttttatggtggttttatcacagcaagagaaaccctaaggacgacaaaggctt
tctaactcatggacagagctcccggtcacctcctccggcaacatcacggatgatgcaggc
tcattaacaatgtaatgaagaacggctgtgatgccatcagacaaggccatcgagggatgg
actgctccttcattgaggaaatggtgaagagttacattcatccatcccccaggaaaacac
atgtgcagagcaaggcaagaagccagcgaggactgaggagagagctggaaagtaacaggg
cagccataggccttctgagagtctctcttcaagcttgtcatcgtgttgctgagaagagca
ggtgacattcccagagtcacagagccagtgtccaccagcagaagtggtcaagagacctca
gtcagcatcagcagagaagcgtgacactagaattgcaggccctgttctcattctgtttgc
ggcaaggtttcgtgtggcctcctggctatgtaactgaggacaaccttaatcctgctgcct
ctgcctccagtgccggggttacagcggtgagccgtcacctgcagacatcacaggccccct
gcacttcattttgtctgttcgctctcttcatgcttggttgaaccttttaccgtgatggag
aagacacaagcaggtggaggagatagatggcggactgagaagtggtacccgctcaggttc
aggcgtcgtacagatgtttgcagagaggtgccaagacagcagccggagctgaggccctgg
cactctgaagaactgcgggcctggaagtcatccccacagtggtcacaaatgaaacccaga
gagagaagtgtgatttaggattctgactcagcccagctgggcagaggatgcccagcagat
ggtcctatgtttcccatcacagaagttaaagcagatagaggaaaaaaaaaaaaaaaacag
ggaccaaatgatgacattcaaaagctgcctggagcaaagcccttctatgaacaacgctat
tccatcttcttcctaccggtaaccacttcccacgtgaaccccaagaaggcaaccgtgcag
cccacaagagacgtgcaactacagatacacttcctgctcatcaattggcaacagtaaaca
tctgaagcaggcggtccacagtgtggtcacagcaagagttgcccctcccacctccccagc
acagctccccacacgatggtacattgtgtgaggtgagcctgcaccaggaacttcagaacc
agggcttataaaacagaactggtctcatactggggcagcctagctgggattcactgcctc
gttcactgccaggttcaccagcaggctcctgggaacttgagaattttcaaggaaagaagc
tgctagggtcccaggctcaaagggactcgaaagtaagacaactccccttccatactccac
cccagcaacctctgtttacgggatcagtaactttaaacaatcaaaggcactctggagttg
aagtatacactatacaagtataaggacccgagtcctgatccccaatacccacatgaagac
ataggcacagagcacaccactaatctcagcactgagaggtaaaaacagtggctcttatgg
agtaggcaaggggaagaggctcactggccaaccaatctagctgaactggtgagtccaggt
ttagtgagagaacatgtctttaaaaatcaagtaaaggccagtggaggaagatctagactc
tagcctccacaggtgtgtgcgcgcgcgcacacacacacacacacacacacacacacacac
acaccatgaatgcaatacccatgaatgcaatacccacacctgcaaacagacgcacaataa
aaagaagatcgagagaggacgagaaagagagtcaaagccaaaacagcaactgagttaagc
aagaataaaagagtcaaacttcaaacatcttgaattagcttgaaatgtttgacaacctct
agatcaaaaggaaagaaaacagtaggggctagggacagggacaggcagtttgtaatgaac
tggaccaagatcaccagctgacctaaagaccagaccatatgcactgtgaaaagacccagg
gtattccacacctacatacagagcgctcctccaggaaacagcagaggccaggtgtgacag
gccagaacggtttctaccaatgccacatttacagttttatatcttcacgggtatgctttc
aggagagggcacagggcatgtcggagaccagtgggacacagctggcttggaacacagatg
actctgaagctggaatccttaggaatctctaggcaactccttccctgaggaaggaagcac
tgggtgtggtacctctccccgcagcgagggaaaggcaggtgttatcttcatagtaggaaa
aagagaagctaagccacagctgaagacagatatctgaactgccttaggggacctttgggt
gtggctttgggtcacaaaaggcatagcctttgggcacagtactcaaagaattctctctgg
tttgcccttctgtctccttaacgtccaactaaagcagacgatctgctcagggtgccatca
gctgcctgctaggcactctgagcacagttacaaatatatttgcatctccctcttcacaac
aacaacaggggatgggaccaagtacaggagtcctttcccatgttgtccacacctgcacga
gcctggagcctcactccaagacactcggagtcaacagctattaattaagaagtaccttgt
gccacaataagcaccctagtaggtccaggaagcctgctgacaacccactatctctgccat
tgacttcgtgtagcacgacaggctaatgacacatctggattctttccaggatagaggccc
ttggggagaggcccctgagggagaggcctctggggctgttcatgttttggttttggtttt
tggttttttttttaatgtttcaacagctgtgtccatctgtgttctaaccacaagaggaca
agactgaagactagtgagctgaagaggttaaggtggaaagatgagggttcctgagtccat
ctggggcatgaacctccacagctggagaacacaagaaggttctatattgcagatgttctt
cactgggattcagggtagcttcagccaaaagcaccctgatactcaggcctggctgcagtg
ccgagtaggaaaatggaccagagggaggagggaccctgggctaactgcaaagcctaggca
caagaggcaaaggactcagcttaatattttccaaagtccagcatgataccagcttagccc
catcgtcatcaaggctgtaccaaatctccagtaagccaggatataagtaatcactattct
gtgccttcactcaccccacgcatgtgtctgcagggggagacgcaaaccattctatgagat
gccacagagctattgaggcagacaatgggcaccttagaactcactgacatcctccgagca
ggcagctagcttttctcatcctgttcccgttcctgtcacctccgctgcattcctatgagc
ttagaggccagggctgtgcctgtgcaacagtttaagagttcacagagctccaggctgtcc
ctagacttccagtacattctttagagcaagggaagaaggaagatgagctttagacaatgg
caaaaccaaatgctgaggtggaggggacagcaggagggagaggaggagggggaggaaaag
aaggaaggaggaagaggaagaggagaagggaggagggaagccatgctgtgcctaccccca
ccccaccccacccccacacacatcttgtgccggactccactggcacaggcaggcgttcat
tactctgggccacgtgcttgctccacaagcctggcacagtccacgtttttaacgcagaga
gaaagaaaaggcgtgcttgctgttatttttgattccttcctcagcaccttccaaaattct
ggatcagaaggatgagccactaaacctcccccagtcgcagctaataagcagcacttctaa
ggctaaaatggagcagaagtgctctgtgcccccttaagagaactctggtccaggccacta
aatgtcatccaggggcagtaagtaagtggcccgaaaccctgggtctagaaaggccagggc
ctggtaagatacccctgcttctcgccttccctccatcgtccttgagccctacctcctcct
ccacttggttccatccattcagcagcagagccctaactcggccagccctgccctagctct
cacctcaccacatcaggttagggtcagggcttgttttaatacccagttgccaactcacct
caggacctcaggccggtcccttccccgggcttgggagggattGCGTCACACAGTCACTCT
GA
Primer
(+)TGTTTATGGAtgtgccggct
(+)TCAGAGTGACTGTGTGACGC


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.