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Mouse element [ mm2120 ]


Position: chr9:63,578,341-63,583,067 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CGAAGTACCTCTGCCGTCTCagaagttggagctaccaggtatggtcaaaacacacagata
cttaactgcagagaaaatgacagcaactctgagtccacattgctgtggccaaccaaggca
gccacaacctgctaagatttttaaaaaaggttgaagcatgggtcctgagggctgcaatag
agacatgtggtcacatccctgcctgctctagtgcagcctgtgctgcggcagatcgcaggt
aattacgagctctgatggttgtggctgcatgagaagtaacgtgtgtttattaagttcaag
gccctgcctgtaacatggttatttagagtcattaggacctgctagagcaggccctggcct
ccccgctatcacatcgccccaccctgccacggccctctccgaagggcagcaattttgagc
caagcatgaggcttctatgctgagtcggccttagaaggcagccaggtaaatacctgcaac
cttgtccaaggacagcagctgaggggacagtgcctgattgactccaggtgcaggctgagc
gggagtcacaatgaatgtcatcttcacctcacatcttaatgtcacctctgactacaattc
agatagtgccaaggtctgaagttgcatgccctaacctgtccagggctcaggatggctttt
ctaggcccatccccataagccagtgtgtaggctgcctcaaaaggttttggtgtccaaagc
cttgccaaaggatggatgggccagagcttggaacactgaaggggaggtgcctgaatagct
gaggaccagaaataacgtgatcgggggtcagattcttcgcctgactcaccccaggtgaaa
tgcttgccatctctgagccgtggtatcctcggccactgaggaagacctccaataggatgg
cactaaccagcctcactaaagtatgccagtcaagccttccattggtcccagaggctatgg
aaggcaaggaaatagtcacaagtatctcccttgtgtcctatggggaaccagctccaatta
gccctgccaactcatagtcccaacatattaccaccgtcagcagagcatctgcccagttcc
gctttcccttcttagcagccacactgcacatggcttctaggcaaggtggcctttgtctgc
ctcttgggacagggctagctcacatccttcctcctacactgtggaagccttagctgctgc
gtgtcgctaacaccctgcttgacaggatttgagcagtagaaactggagaggaagagagaa
gaggattgggagggggcaggtaagggaaggggatgggggagagggaggggatgggatgaa
ggaaggggacgttaaaggggagagagaaagggaggaaagagaagggggtggagaggggag
agggaaggagagagggaagggggatggggagagagggaaggggagagggaaggggagaga
gagggaaatggagaaggggagggggaggggggaagagaaggggaggggaggggaaaggga
ggaaggaagggaccaggagagggaaggggagagagagggaaatggagagggggaggggga
ggggggaagagaaggggaggggaaagggagggaggaagggaccaggagagggaaggggag
agagggaaatggagaggggggagggggaggggaggggggaggggggaagagaaggggagg
ggaaagggagggaggaagggactgggagagggaggtagagaggaagagaacctgcactag
gccaggacagaggttcacagagatgtccaggctacccacaggattaggaggatgtgtgaa
cccaatcaactttatacttaggggcccatggtgaccctgaccctacgtgttcagaacaac
acctcttctctttatccctccagactaaagatgagagtggcctcccactgagctctgggt
caccttgtcttcccacattctcagctctggtatcacctgtgtagccaaggtcccgtatta
aattccatttgtggtaagtacagcatgcaggtccacatccctagtaagactctgaataac
tcaatgtaactactgactacagcagttcagaaagcttatacaggcagaaggtcctggagg
gtcctagaaggccatgtgcgagaattaaaagaggtaaattgataaaagcagcaccacctg
aatattatcaatatctgaaacaggggccaactacaatgccaaggccaactgcaagggaaa
gctggagaggcgaaaatccgtgacaacagcagagacaaccacggtctgtactttcaattt
taaaacaccttattttcttgaaaccatggccacagccacaatgacaccagaagttcctcc
tgaaagtacctggtggttatccagaggtgagtgactcacttgctgaggaggtcacacgag
catcacgctgggtccttggctgctggggagggcaggtgaccagccaaaaccccaaacctc
ctctagccttctcttaggtttggagatggggtcgggctctagctggagtccctgagatag
ggcgagattgttggggtgttggggaactgtgaagctcttcacacagcagcaggggctggg
tggcagagcagttatggcacttcaggcccacagggaaaaacaacaatgaaagagtggggg
ccgtggtgacttggggtccagcaactgggagggaagttttacttcctttcccacagacgt
aattaaaatcaaaaggagccgactgaggtgggcatgtggcacacacttgtaatcccagca
ctcagaaagctgaggcaggagttcaagggtagcctggattacagagtgactctgttgaaa
gaagaaaaagagagagagggaaagagagagaggcagagagacagagaaggaggagaggag
gggaggggaggggagggaagaggaaaggagaaacaaaagagagtaaggggtccccaaggg
taagagtgtgcaagcctattgatctgcgttcaatccctgggactcacagcagcaggaaag
tgactcctgaaagctgtcctctgatctccatgtgcacccatgtacacacacacacacaca
tatatatgttatatatcatatgtgtagatattatgtgtgtatatatgtatatgtgataca
ttatgtatatatacatatatgtgtgtatctatgaaatataagatggtaaatgagatttgt
catatatgtgaatatacacacacacacacacacacacacacacacacacgaaaaatggct
cctgaagccggttgataagcagatgaatttgtgcacaggaactctgaggtcctgcctcct
gccctgaagtgacgatggcgggtaactctttcagggaagagattcccatggagtgcctcc
catatgaggacgagtgggtgacagcttagcagacactgaacagtcagaccatgacctact
gtaaaaagggtccttcactcttagcccaagctgatttacccaagaaacctagaggccggc
ttcaaggaggaggcctgaggcagagccttaagggctgccagacaagctcatgtctacttt
tttgtcttcagtcttgagtggaaccgctcagctcctgggtcacgtgtgccatacgctcat
gaggaaaaccaggctcaacatatctagaccacataaggctccaatctagcatcagagagt
actgcccagcaccggctcctacctgtccttacacgccccacacacacttaccccttactg
ctaactggtttctaccatgcaggactctgactgctctggcgatatgaccatttgctaatc
tgccaacttaacaagaaaatgtagttagtattatgcagctatttcttccagattgaaaca
tggcctcctcgaggatcaagggagcctcagaacatccacgaccaacttacaaagactcgc
agggctcctcttcgggttaccgaagcaggaagtaactgcggggaggggttcttcagtgga
gctgctggctccaggaatacagatcttgcgctgccaaccatgctaagatgggctcttcag
tgatgcagctgtgaaaatcacccacactcctgtaagctatgcagataatggcatcaccaa
gctggacctggacagcatcacctttggtgtatcagtgcccaccctacctgcgattaccct
gggggggggggggcggggggggggagaatccttcatagctgggacttgtgcaaagctgag
caataaaaaaaatcaggcaaacgagtcaaagagccagctaacggaagatggctttagaga
tgagaatggaactgtggcagtacttccccgactcaagagccaggaggtaagagatccgcg
gttttctgagacaaaacacacagcaggtacatttcttaaggaaatgctgccattaaaaaa
taaatgtagacctgaagggacagccatagaccctgctcctccactcagtacccctcagta
ggtgtgtccctggtcacttgccccacccactccctctccagggcactgtgaagacattat
gtaaggggccagtgtatggcaaccatagtgcatgctgacttacttgtgccctagcccacc
cctgcccttccaagattgaagacaaagaccacccagtcagatggggatctggcttgttcc
agttccctatcacaatgatgatcataaagaaagaaaagaattacaccttcgaaaaatgca
acgcaggcagggtggtccccaggacagCAGCCAAGGAGAGAAGTGGG
Primer
(+)CGAAGTACCTCTGCCGTCTC
(+)CCCACTTCTCTCCTTGGCTG


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