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Human element [ hs2119 ]


Position: chr3:171,022,891-171,027,653 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR569 - TNIK

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
tgagAAGGGTGCCTGAAAACAGTGctaataaacactagattaacagcactagtcacttag
agagctaaagcataacctgactttaatgcggccagtacatagcacatattatttgtttct
ttcattttcttcaaccagaccactgaggaaaaggctacaatgagtgcaggaacatttgag
gacctgaaacactcttttcccattaaagaaaatatttcatctgggccaaaagcaattgca
acaaaagcaaaacttgacaaatgggacctaattaaattaaagagcttctgcatagcaaaa
gaaactatcagcagagtgaacagaaaacctacaggatgggagaaaatatttctgaactat
acatctaacgaagtctaatatccagaatccacaaggaacttaaacaaatgtacaagcaaa
acacaaacaatcccattaaaaagtgggcaaaggacatgaaaagacacttttcaaaagaag
atatacatgtggccagcaaatatatgaaaaaacgctcaatatcactaacaattagagaaa
tgcaaatcaaaactacaatgagatacaatcacacaccagtcagaatggctactgttaaaa
agtaaaaaattaacagatgctggtgaggttgcatggaaaaggcaacgcttatacactgct
ggtgtgaatgtaaattagttcagccattgtggaaagcaatgtggagattactcgaagaac
ctaaaacagaactaccatttcgacccagcaatcccactactgggtatatatccaaatgaa
tataaattattctaccataaagacacatgcatgcatatgttcactgcagcagtattcaca
atagcaaagacatgaaatcactaattgcccatcaatgacagagtggataaataaaatgta
gtacatatataccatggaatactatgaagccataaaaaagaactagatcatgtccttggc
aggaacgtggatggaaccggaggccatttccttaggaaactaacacaggaacaggaaaca
aaataccacatgttctcacttataagtgggagctaaataatgagaacacatagatggaaa
gaggggaacaacacacattagggcctacttgagggaggaggttaggaggagggagaagtt
cagaaaaaaaatctgtcaggtactatgctcagttactcaagtcattaaacaatctgtaca
caaacccccaaaccatgagtttacctatgtaacaaacctgcacgtgtacccctgaagcta
aagtaaaagttaaaatttaaattaaagaaaaagaaaatatttcatatggatattcattcg
ggactctttcaccaactttgcatcacagatctgaaagtggggagtacaaaattacatttt
ataaagtaggaaggcaggttatagatgccagctgcgcttctcagggcatgcaaaatgact
tttaccaaatttaaagaagaaaaactaagcaaatgaaattttttaatctttccatttcag
tgaccaatggtgagactcttaaacgtttggattccttttgaacaacaacaacaaaattat
atttggattccaagtgcctcattcaaatgggctttcatgaaaaagcaaaatgacagggcc
taaatgtaaataccactaaagccccaggaagctgaaaagaaaaacaaccagtagggaaaa
cgtgttctctgtggtcagaagcagcaatgattcccagcgattccatgctcggcttttctt
aaaataacaaaccatctaaagagagaaggcaagtgtgttctgctgccgtggtgatgggaa
aaacctcagccagcagcgatgggaactgactagtcagacttggcagacacaagccccggg
aacaaagtcaacagcatgcttcatgttttagggaggcttgtctactgtgcatcttcagaa
aaaagatttagaccgagaaattcatggccacggccagaggttgatagtaaaaaggtagct
agtctaaaaacactcagccctaataccaaatcgtccttcacatacgtttccaaaacctat
tttctatttatttcttttctattaaattttatgggtggtggtgaggtgagagagtagtaa
aaacaggctggtggtggcaaaaattgccattctgtgctaccactctgggcagaatctcaa
aagctgaaagtcatgccaggctcaggatcatcaaatagaaaccctgcatccagcctcatc
catgtcaaccaggacttcaagggaaggcctcttcttacatatttccatgtttagaaactg
cacacacattccatgttcacttactctaaggggtcaagaagttccttgtgatatatgatt
aatatgcattctcttcattcatttgactcagaagtctaacctaatctgtgcaaaatagtt
actgaaagattagaaactattgaatttcgttctttgttgttttgagttttcttacttttt
taccactagtagtaccaattccagaccacaagtgatttgtgaaattcagccttcattttc
aaaactgcgtataagcctatttatcctggaaaaagaactgacagttgactaaatgaaaga
atcagcacaatcatcccaaatcttgagtataaacatctcctgtcaatggtctgggatggt
tctcaaagtggtttggggacctctgaggatctctgagaccctttcaggggtccatgaggt
caagacatctttataataatactataatgttataagactttttcattctcattcttcaca
attgtacagtgaaattttccagaggctatgtgccacgagatgacgttatcactctgcagc
taatgaaatgtttatatattcttgtacttgaaaaatctatcactggaagaatcgatattg
ttaaattggccatcctatcccaagcaatttacagattaaatgctatttctattgaactac
caatgacattattcacagaattagaaaaaactattataaaattcatatggaaccaaaaaa
gagcctgagtagtgaaaacaatcctaggaaaaagaagcaagcaagaagcatcacattacc
agacttcaaactatactacagtgctatagtaaccaaaacagcatggtactagtacaaaaa
cagacatatagatgaatgaaacagaacagagaacccagaaataaagacacacgcctacaa
ccacctgatctttgacgaagctgacaaaaacaagcaatggggaaaggattccctatacaa
taaatggtgctgagataactggttagccatcctgcaccccttccttacaccacacacaaa
aatcaactcaaaaatgcatcaaaaatttcaatgtaaaacttaaaactataaaaatccttg
aagaaaacccaggaaataccattctagacataggccctggcaaagattttatgacaaaga
tgccaaaagcaattcaaacaaaaccaaaaattaacaaataggacctaattaaatcaaaga
gcttctgcacagcagaagaaactttcaagaaagcaaacaacttatggaatgggacaaaat
atttgcaaactatgcatctcacaaaggcctaatatccagactccatagggagcttaattg
aacaagcaaaaaacaaacaccaccacttaaaagtgggcaaaggacatgaacacttttcaa
aagaagacatacatgcatccaacaagcatatgaaaaaatgctcaacatcactaatcatta
gagaaatgcaaaccaaaaccacaatgaaataccatctcacaccagttagaatggttatta
aaaagtcaaaaaacaacagatgctgacaaggctgtaaagaaaagggaatgcttatacact
gctggtggaaatgtaaattcattttgccactatggaaagcagttcggtgatttctcaaag
cacttaaaaacagaactaccattttgaaccagcaatcccattacagcatatatacccaaa
ggaatataaatcattctaccataaagacacatgcacatgttatgatcactgtagcactat
tcacagtaacagaaacatggaatcaacctaaatgcccatcattggtagactggaaaaaaa
aaatgtggtacatatacaccatggaatactatgcatccatgagaaagaatgagaccatgt
cttttgcagcaacatggatggagctggaggtcatcatcccaagtaaaataacacaggaaa
agacagccaaatactgtatattctcacttaataagtgagagctaaacattgagtacacct
ggacacaaagaagggaacaacagacaacagggcctactggaaagtggaggatgggaggag
ggtgaggatcaaacaactatctatcatgtactatgcttaccatctgggtgaacaaataat
atgtacaccaaacccctgaagcatgcaatttatctgtagaacaaacttgcacgtgcaccc
ctgaaccaaaatcaaagtttaaaaaaatgcttcattatatttaataaactcccaattact
gatcttacaataaacattggtagatataactaacataaacaaaagcttcttgaagtcctc
agtaacttttaagaatgtaaagggtttctgagactaatagtttgtaaagggtgggggttt
tatgaagagagacctttcattcaaaatattactaaataataactttgcaatgtggtgtca
cacaagcagctgggtgtctaaaaactaaaaaacttaaacatccttaaactatttttcttg
aagTCCAGCTTTCACCAGTAGCC
Primer
(+)CACCAAGGGTGCCTGAAAACAGTG
(+)GGCTACTGGTGAAAGCTGGA


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