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Human element [ hs2118 ]


Position: chr3:171,011,050-171,015,963 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR569 - TNIK

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ttCCTGTGCCTGCAGAAGTCTCATtttactccacgcctacaagattcacaatgtatcttc
tattatgcatttcagctcatcctcaagcctccagccaaacctggtctccatttagtaagt
cttcactcccaagggtaggatgtgcaccactggtaaaccagatgacttaaggtgactgag
acagaacattaaatagcatggaatcacataactatggggaaattattttcaatttttttc
aactcttctgattctgccaagcaatgcatctcagttttgtggtaatatgtctttgacacc
tttctaatagtggctagtttccccttttcaacacagagacaacaggtctcatgcaaagaa
ctttctccaggaaatagcatctagctagaaatgaataacattttttttccactcaatgta
tttttagagttaccttctatttgtagtgatattgttttttatttgtgataatgacataaa
gtttactttttaaaatcaaaattcataaaaaataacttgatttaaagaaaaataataggc
caggtgcagtggctcacacctgtaatcctagcactttaggagatcaatgtgggaagattg
cttgagaccaagacttccagaccagcctgagcaacacagcaagagctcatctctacaaaa
aataaaaaatataaaactggccggctgggcgcagtggctcaagcctgtaatcccaacact
ttggaaggctgaggcaggcggattgcctgaggtcaggagttcaagaccagtctggccaac
atggtgaaaccctgtctctactaaaaatacaaaaaaaaattagctgggtgtggtggcaag
cacctgtaatcccagctactcaggaggctgaggcaggagaattgcttgaaccagggaggt
ggaggttgcagtgagccgagatggcgccactgcactccagcctgggtaacagagtgagac
tctgtctcaaaacaaacaaacaaacaacaacaaataaaacaaaacaaaaaaaactagcca
ggcatgatggcatatgcctgtaatcctagatacttcaggaggctgaggcaagaggatcac
ctgagctgaggacatcaaggctgcagtgagctatgatcatgccactgcactgcagcctgg
gtgacagagtgagactctgtctccaaataataatagtaggccagtcgcggtggctcacac
ctgtaatcccagcactttgggaagctgaggtgggtggatctcttgaggccaggagtttga
gacaagcctggcctacacggtgaaaccccatctctactaaaaatacataaattagccagg
cgtggtggtgagcatctgtaatcccaactactcaggaggctgaggcaggagaatcacttg
aacccgggaaacggaggttgcagtgagccaggattgcgccattgcactctagcctgggcc
acaagaaggaaactccatctcaataataataataataataatgaatgacagtataagtca
tatacagataagaatggggaaagattgtagtaaatagttctaattgctataacagatgta
tccccatcccaaatctcagtagcttacatacagaatttcttactcatgaaaatgccaata
acgctacttgggtgtttctagtttgtggtagttatccatgtgttcattcagagattaagg
atgacaaagtctctgccatcttcaacagagatctcaagatcactttgaataggtctggcc
agggaagagagagagagagagagagaggaaaaaaaaagaatagcagacagtgtgggcagt
ttgatgggccaggcttagaagagatatatatccttctgttcacatattactggataaaac
tgagtctatggccacacttcactgtgaagcaggccaggaaatgggtctgacctaggagaa
aaagtgttttgggtttccatgagcataaagtttaggtaactgccctaagatttggggaac
tatgcactaggttatgtttcttcaaagcagaggagaagaaggaaccatcatttctcagaa
aattctctttgttttataaggatgacttaagatattagcatctctccttcctgcctgcct
tccagatcccatggtcaggcccctccccaagaaatgcagagactgacaggcagtcctcca
aagtgttctatccatttcagtagacctccaccacgggaatctggggtgcccactgcagct
ccaagctgtcacatctcctgtcccccaactgccctttctttcccagcagctttgtaatca
caatttaccaatcctgcctctcaccctctccacaaagtctttgctttctgacagttcaat
taggtaacttgaaaaagtagccagtgttcatgttaattgaaagctctttcttccttctct
ccagggaaattaagaacattttacactgtggctgcctggaggccacggtattgttttgag
tgtgtcctagcaatgtgtggccaccacagaccagggaggtagccccatctggctgggggg
caactccaccaaccccacttcttgaatatctggcctgttcctccgtggccacccctcacc
caagagagagtgccagctctttaaaagcaggacatgcccctcccaggatctttctttgac
gcccacagatcacagagggcctaatgcaaggtcgagtactaggctttggctcaggacatg
taactgaattcaaatgattgattcagtgtcactgaggtattagcagtcatttaagttctg
ttctatgtactctaaaaacagtatatttttaaacaatgtagaacagtatgtgtcaaacct
ttagttactcccaaaatgctataattaaagagtcaactcctcatattttgtcagatcaca
gtagaactcatggacttccagccttctctcagccacgacctgtgcttgacccccactatt
ttaaattcctgaactgttggcagaagtgcctgggtagatattaatttctataaatatgtt
ttggagagaggcagccaaggcaaattaactggtgtttcatgagtacacccataaaatgct
actctagtaaaaagggcacctgatactaaatcctgaacctacccttccccccaacacacc
ctttttaaaaatggaacccctagattcaaagacagtttggagtggaggttccccagataa
tgtctgcttgcttgttagttacattgattttaagaacaaatccatttaagcgatcttcac
agctgacttgtcctctttccatggactgtgggttctggagccagactgccaaggtttcaa
tcctgattcaccaccttctcattatgagatttggagcaagttacctcacaggatgtttag
gacttgctttaaaattcttcattcaaaaaataaaaggggtggtggtagagttactgaaat
aagatgggcaaaatattgataattattgaagataagtaaggtacaagtcagttcattcta
tccactctcttgattgtttgaaattttccataataaattcttaaatgacacttttatcta
gaacacaagtaattccccaaggctttccctcacaaaacaactttctcctctatcagagat
gaattgtagaaaatatattgagtattctatctttactttcaactatgcagaacaatttct
tttagatttcgctgttctcataagttaataatataacaggaagaacttaattttttttcc
ttctaccttcagctgtttaaacctaccaagaaatcaaattccctgatgtgcagtttaccg
cagtccttgcctcttatgataaggccagtcaagatcctaggtatctggacacagctataa
tttggtgtcgttttcagtgttggctctgagatctcagtctctcgataactcccctttcca
aaaggggaaagaccgggggcggaaggaagagaagacaagaagagagggaatgtactgcat
cctatttcaagcactaacacaactgttttctcccccattgactcttcaaaacacagatgc
catgcccatagagaggggagacaaataaggcgatatgttgggctcaatatatactttctt
ttgcacccccaccccaactttcacatgtaagtaatgcactgagaaaaagagatgacttcc
tgctggagctcagactgtgccaatagaaactgctggtttccctcaagtgatattaataaa
actaactttattggcaactcctgtcagggctgcacatgataacgtcaaaattgtacagat
tggggaaaggctgtttaaaagttttcccccaaattatcagtttttaattatatcccaaca
aaatattgatgtctcttttatcactgataggtcatataaaatttggagacagttttcctc
tatgtctttgagaaaaattaaacaatataattttattacttctttcacatatcttcatca
gctaacttaacatggatctgttaaagcattttaagtgtaaaaaatgaaatttgagtttta
tgttaaaaatttaataattatatcaaagtaaaggttagaaactatttaaaaccagttaat
atcaacatcagagaaagaaaaagtatataatgacagttctaattattacattctcttgtt
ttgcacttctaaagagtggcaattaaatctctactttgacttatgtggagagtaaaatct
gcacctgcaatactaacaccatttcatttcctccaagaaagggatttagttccttacaat
atagatctggggttggaatagtagatgcaaactgcttctagaatagcacagtgcctctga
tgatttaggatggtgttccaaacaccacttggtttccattcaatatgaacaagtacaaaa
tgatcctttgagtccccaccaaaatcagtacaGGCTAAAGTGTGTGTTGGTTTC
Primer
(+)CACCTGTGCCTGCAGAAGTCTCAT
(+)GAAACCAACACACACTTTAGCC


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