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Mouse element [ mm2117 ]


Position: chr9:63,546,991-63,551,986 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGCCCTGGGAAACTACATGCaaatttgctttctctgggcaggggatggaggcaggtaaac
atgagctaggtatctatctggctttggagtcagcaggtcctggctcagctcccagctctc
tctatgtggccttgggagagctgctgagcattttgaactcacttccccatcagtcaaatg
cacaaggcaggcaggcaggcaggcagtcagccagccactagccgggctactgggaggaca
gaatggaatcaccgaagttgtgtgtccagctcaggcctgggacacacacacacacacagg
tgcatttccttcctcctttcctgaagaaaacaacaagctccgaatcccacaggactcccc
gctggctgtgtaactcaagtgagccacagcctctgggaacgcgcctgctaccctccaaag
agctggggacactagcaggtagagtagatgctacaaatatactgcacactacagtgagcc
ccctagccacacatggctactgagcctcagtttctctggctggagccaaaatacttattt
acttatttgcttgtttattgatttgttatttttaatcttaggtgcattggtgttttgcct
gcaagcctgcctgggtgaggatgttggatcccttggaactggagctaaagagctaccatg
tgggtgctgagaattgaactcaggacctctggaagaacagccagtactctttactactga
gccatctctccagcctaaaggcaaaatacttaaaataactctataactcacactatattt
gtctatcagacatcccggacttagaattctcaaaaaccatttcaacaataacaacaacaa
caacaacaaaaaccttgcatataattcttttcacagatcaagagcaacctcttcttgttc
catctagcccaagtgcctgtcaagatactcagaagaatctaagaaaatccaaacattgtg
gaaatggcaagtcgtcaccatacacctgggagaaagtcaatggactttgtccatactagc
ttcctcgaccctcacaaaccccaccagggagtcctatcccttcactaatacagactagaa
aagcgggggagggggagctggagagagcacagcagttaaaggcacttgttctcacagagg
agccaggtttggttcccagctcacagtcacccgtaactcccgagtctgagatctaaaacc
catttctgcccttggcaggcatctggcacacacattcaggtaaagtactcatacgcataa
aacctcttaaggaaaaaaagaaaagagaggagaagagaagaggagaggagaggagaggag
aggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggagaggag
aggaaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaaga
aaagaaaagaaaagaggggctagagagatggctcggttagggaagtgtctgtcacacaag
catgaaggcctgtgttaggatccccatcacccacatgagggccaggggcagcactggacc
acagaggtgggtccctggagctcgcctgcttgctggcccagctggattaatgtaacatgc
tctaggtacagtgagaaaccctgtctgaaacaatatggtgggacacacacacacacacac
acacacacacacacagagtcaaggctcagaaaggttaatgacttggccagtgctgtagaa
tgggtcaggagcagaagactgggatccaaacccagttctgattctcatgcgcatgccctt
cttcacagtgcatgtaatgaagcaggcagcccatacagcattctctacattacacatagc
ctacctagtaagacttccaatacccaccccacccgcacaaaaggtttcccagcaggtcaa
gaataaagaccataaaaaaagagtccatgtagaaccatatccacaaatagctgggcctcg
actagctcagacttagtcatatttcctaagtgatgggaaaggcacattttattttattgc
ctttgaacttctctgccagggtactgggcagaacccaaaggcagaaaacctgtgaggcat
agggtaggtagatatacaaccagccaatgagccaccagtccagtcaaccccattgtccag
gcagggacaatgatacaacttctgagacttgagaccaaggacatacacaggacaataaga
accctgcaaaaactgtactgtcacatggccggctgagactgagtggcctactgccctctg
caggccttagtgcccagaagagcagagacaggtggccagtcacctgttcaaggagaggac
ctgcctgaggaggacccaggactgaggactaaagacaagctcttttctttttaaaggtgg
tgtccggcaggcggagagggaggaggaggaaaaacaagacgccagtagacgtttcccatt
caacctcagacagggtaaatatttgctcgtccactgtgagcttggctctgagagaatcct
cagcttggccgcctgggttcacactggcatctggtcttgatttgaggcccaaggcagcca
gtgcttagcccatggcaccgagaccagtctcctgctttgtctgagagctaaatggatccc
actggacaacagtgagagaacacccaccagagaggccctgttgctcacacacaagcacca
ggccatgctggcaatgaggcggcccatgtgggctgtgctcatctcttccccagggagctg
catgggaggcgcatggcctccaactccaccacgaagagcctaggacagagcagacacaca
cacacacacacacacacacacacacacacacacacacacacacgccagtgccacaccacc
actggagccagccacactatccacaagctgagggagatctatttcctgagggcctactgt
gtgccagaaattgcttaaagttttgagtgacagccatggataagactggaaaaaagtcat
ctttagggagtggccatttaacacagaatgacaaattatagtattttcatggctgacaca
ggttgaccgtctggagcccagaagtctggggtccggacacagtgtcttggatacacccca
ccactcgagaggaaatgaggggcaggaatcacaattcatgctccaatctcctgacgtgta
aagaaggcttcaagaacatctggcttgacaccccttgacaagatggaactaagctcccaa
aaggcctcgaaggttacctgtactcactctaaggaagtgacataaactctgacaccagag
caccagcacgcacagagctaaaatgaggaaagacgaaacccaaacagcagcccagggact
cgcagctgtccatcaaagactgtttcccagggacgaacgcccccacacgctggccctgcc
aagacagataactcttagtcaagcaagttgcttaactgggcctgtgtgtgggttcccagg
ccgtggtcccaccctgtgggaacccagcatgtggggctcccacttaagtgagcggctgga
atcaatcgcccctcggccgcagctcttgcccacaagttgctcttctggtcaacgcgcttg
agctgagcggtgacctaagccagcccaaatcggctcggcagcagcctctgtcatcctgct
tcagtgagcacaaggctcacatttcagaccatttgctcccttgggcatggctcagaggac
tcagctgtctttaaaaaaatgcttttcatatttcaaatcaaaaataaataccacgcactc
tggaagcaagccatcacagatgtctgctgaactataaaagtgaaaggggccgagaaggct
gagaaagtggtgggtcatgttcccctgcgctgactgcctccgtctacaacgggatggaag
agcaggactgaagctcaggtcacaggctcgtgtctggtgtgaccaatgacaataaagggg
ggggggcacatattcgtactagttgaggaaagcatgtgccctttgggcttatccagaaat
gccacctcacagaaggttcctgcaaacacagtgggaaaaagagtaggtggctggcacagg
agctcgtgggctcaggtgcatctaacagaagggggggaggtctagcatcaggggctgggt
cagcaagttgcacagaggtgtgcccagttatccatccacagacgttcaccaagtttactt
ctggtgactcctgacttcctttattctgcccttctgccctcttggcttccctagtaggtg
cccacaagagcatggtgacatgcattctgggaaatgcttggctaggtgacttacactcag
ttactgccacactgcattctcttctatgtcagggcgggggtttgggggtgctgtgcacat
atatggtatagcctctgactcctgaggctacaatgagcaaatcaaccagagattacatca
tacacaggagaaaatgacaaagccaagagatgcataaacacagggtatcggactccgtca
gcacagtgtggcatcgtctgtgggcaccgtttggctctccagtgcacctcagtgaaaaag
cttgtggtctgatttgtaatcatggcttgattggtgtttcagatacttgctggtctgtgg
aagccagcatccctgttcccaaacctcacaaatgaggctccaaatcattaggaagtatgt
tctaaaataataaaaatataataaatatgtaaaccggtagaacactattattctctgggt
aggattgtatgtgctctgtttttattctacaggcatgagactcaggtgtttccacatcta
tatcacctgacatgtgtgtgtgtgctcgagagtgtgctatgacagccataacataaccaa
tgatgggacttcttttcagctccattataatctttgaggacagctgttatgcatacagct
tctccttagccaaacatcatgatgtagcacacgagggtaaattcacagtacctgtgCTTT
GCAGTGGTCGACTCCT
Primer
(+)AGCCCTGGGAAACTACATGC
(+)AGGAGTCGACCACTGCAAAG


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