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Human element [ hs2117 ]


Position: chr3:170,999,516-171,003,506 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR569 - TNIK

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
tcCCAACCCTGAAGGTCAACGAGgatagtgtttgctacccttgtagagtacaatctttaa
actgtgatgacaagacaataaattttcccaaccatttgaatgagctttggaagtggattt
tttacttgagcttccagaaaaaaagcccagtctggctgatgccttgagttagccttatga
gcattgaagcagagaacccagttgagcctgactgaattagtaactatagaaatgtacact
aagaaatgaaggttgattttggccaaaaaataataataataatggtaactgtgataatgt
gaactggcatcctctcccccacttacagcagacttgaggttaatctagagaatgaatttt
gggctagaagaaatcatccagtccacaatcagtgtcttcaattctagaatcaattgaaat
atttgcttatcatcaaaataacattttcttcaaggcattagtccaagatctgtatcccag
cgaatcacaaagaggagaaagaagagccagcacagagtatttataggtcactgacttggt
gcacagccagaagattttttttaaccaacatttctgccaaaggaactatctgcagattct
cttaatggttttttgtttttttttttttttttgagatggagtttcgctcttgttgcccag
gctggagtacaatggcgcgatctcagctcactgcaacctccaactcctgggttcaagcac
ttctcctgcctcagcctcctgagtagctgcaattatgggtgcctgacaccacgcccagct
aatttttttgtatttttagtaaagacggggtttcgccatgttggccaggctggtcccgaa
ctcctggccttaggtgatccacctgcctcggcctcccaaagtgctgggattacaggcatg
agccaccacgcccggcctcttaatcgtatcttaaagcattttaaaaataacaaatgaaac
tgaaaaagataaatcgaggtatctaagcagttacactgaactcatttctgaagctcatgg
acaaactatgtaaaatctcaagagactgaaaactattttctattctcaagattcaaagta
aaaacttagaatacaaaactctaagaaagagaaggcagaatggtggcagctccagagggt
gggcagaatcctaatcttacaacagacctgggcaattgctgctgttaattctaccagcag
aatgatgtaggagggctccttacagcctgggcccgccttatattctctgcacaatcagag
tggaacctgggcacctattagtccctttccatgctatcttcctgtgaagattcttatgaa
taagaaaacgtgacctttatcaaggaataattttattcaaattgtgtaaactggatattt
tccacagtttcttgtcaggaggtgggcagagaagttaaattttatacctactttaaaaaa
aaaaaaaagcccctcatgtaatgttagcaactgaccaaatactccttggatttcgtgtct
ggagagaaggaactaagaaaacatacagttctctgaaatgtttcctggattctttcctct
ttttccacaaaaatagaactactctttttcttttttcttttttctcttttgatgggggat
gaggattatacagaagatttggcaacctaaatgaacatgagagaaagccaatagtataac
taaaggaaggggatcgccaaaaccattcacttaggggaatttcaaactttggtgctaaag
cttccaaataatcagcatcaccattcaccaaggagcagaggagttcggtcttgctgactg
ccagttaagggctctgaaaaaagacagtctccttggcagccgttccaacctggctcctgc
cccctgtgaaccaaggaaaagtggaaatctaattccatgtagcctggaagaaaccttaca
ggtccagggctgtggagaggtcgggtgaggaacaggagttcccaccatgccactagggtt
ctggaagccctgggaagctgccagtggcactgcagcaccaggaactggttcctagagaac
tgcctcaaatcagacacacataaggaagtcaggcagtgatggcgctgcatgggaatacaa
gcagaacaatctcctcagaactacttcgagggtactgtctctcagccatcttccaggttt
tccacaacccacaaaggtctttcaggtgggtataatttggggttacttgttaagatggag
ttacagcacagcttcattggcaaagacaatgggatctcatatctagaaacaaaactttct
gggtttcaccatttgcccgttatcccctgagaaacatcagcatcacctgttaacttgctt
gggaatgcaaattctcagacccaaccgagacctatgaatctgaaactctggaggggggcg
gcagggaggagggcaggaatttgtgtcttagcccctcattgttaagattctgatgcacac
taaaatttgagaaccattgagcattctagagcaacacaatttcatgaaaaaatagctttg
gaaacagcatctggatattaggcaaaaatatgtgcctgaatagaagaaacacactccgtt
catagtagggttctattccccaattttttaatttagtagttctttgtgaaaaatgtcctc
tcacatgcagcattttaaaatgagaaatctggggccttctcaaccaacttcacacccgct
ttccagggcagctcaaaacaaattactgataaatcaacatggggcactctgaatcatcag
tccgtctttagaactccccacatggtcagctgaggcattccattgagaatgcatcatgtc
ttgacttctctctctggccaatcctgccgtcattgcatttcttaataaacctcctgcatg
ctaaaaaaaaaataaaaaataaaatcaaatgagcaatttattgcaaatagccagtcccaa
agaaatccttttgcctttgttgtttccctcaaaattgcacattatttaaggggcctgtct
tttacacatttttattagcacctagagcaatacaaatcctccacaaactctagcaaatat
gtattaatacagtaataagtaattctaagagcaagcactcaaattagtaaggtctggttt
cctgtagattactaaagcagggaaggagtaagggggagaactcagagaaagcgtgcgctg
actaaaagacagaaaggaagcagaaaatttattctgagcagatgccaagactttgccaca
tgcttacagtaagagaaatggagagcagagaaaattatttttaaaaccttctttccttga
gaactaagttatcatagccctgctttaagatattaggtaaatactttttcaatgcaagac
ataggtggacccagaatattagcaagaaatgtgccttaaattatttaaaggatacagact
atttattttccatggacaggaatcatctgtcttcattcataaaattcaagctgataattt
tttgataaaactgttttctttataaattgttaataaataaataaattgttgataatgtat
catttctacccaagactggaacaaacacatcagccacttaaattcctcagcaatacttag
gctgctgaatttgttatcagtggtaatatatgttagcttgcctgactttaactgcatctc
ctcaaagaaaaacgtagatgagaaagtaaaagtgtagaggtggtgtggtagagtggaaac
tgatgagcttttccgaagtagagctggatcctaatgccagcagctatattgttatgacta
agttaattgacactcaggactgttttctcacctatacagtgaaggctgtggcacagttta
aatgtgttcatgtgtgtacagtgcctgtaagatgataaacaccaaatcagtattattatt
attaagaggcacccattttcattttaaatcaatttattagatgttaataaaattaacccc
tattcctccatTCTGCCTTCCATTATTTGGC
Primer
(+)CACCAACCCTGAAGGTCAACGAG
(+)GCCAAATAATGGAAGGCAGA


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