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Mouse element [ mm2116 ]


Position: chr9:63,533,709-63,538,351 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGCAGCCAGAGAGTCCAAAcaactcccaggagctgctgggagtttgtcaaaaaaataaa
acatgactgtcaggggagagtgttcagtagatgaagtgcttgccatccaagcattgggga
cctgagttcaatcccccgagtccatgtttaaaacaacaaaaccaaaaagcccaacaagtg
gtcacactggaatccaagcactaggaagacagaggcaggcagatctctcagactccccag
ccatgcagccttgcctacttagcaagttccaagctagggagagaccctgcctcaaacaaa
aggtggaaggcatctaagggatgacactctaaggttgacctctggcttccacacataaat
gtatacacatgcaagacatgcaagacacacatacacacacacacacagagagagagagag
agagagagagagagagagagagagagagagagagaagaacaggaagatgagaagtagggc
gggcccagagacctaaggtacttctaagaacagagaatgctgggtaaagaaaagccagct
aatgggtcacctagcttgcaaccgtgagacaacggggcacagatctatagatggacaacg
tgcagagagtgagagactttggagccctcagagcccttaatgctgccatcaaacccatcc
cctcaaggctcagggatctatgcagaaggggagggagaaagcttctaagagccagagatg
gtggatgactctcaaagacagcatcttccagacacagaagaacagatacacacaagagca
tggggctgacagcacactcaaggcctgcccaagttcaaaccggacaaaatctcagccctg
ggaagggaaagcagacacaaaatccaacccctaaccaagaagctatttaccgccgacgtg
tgcagggaaagaaaaagtacgttttcttcagaggaatgtcaccaggtgtatcaaccacac
tccagggcaggtcccacgcccaggagtagctggccaacataaaagggagacttgatggct
atatgttttgctttattgatttttatttggttttggttttgttgtgtgtgtatgtgtttt
aattttcattttctgttgtttttgtaaggggggattgtgtgggtgggttttttaagagaa
agaacataaggttggatgggcagaaaggttgagaaatctgggaggagttggggagaagaa
agaatatgttaaaacattgtttaaaatatatgaaattaagtcatttaaaatgtaaaataa
aacacaaacacacacacaaagatgcaggcaggcccgccatgtgccgtgtttaatgctgac
agcttcttggtgctttcttccactgctcctaatctgagggcggatgtgtctaaccagata
cctctgtcccattccagccctttcctgctcaggagagaatgcctgccctgggggcttcta
cttccccacagggattcccaaagggtctttgagggccagagagccggtgggccccaagtt
gtcacctcacactccctcctgagactcttcctgcgcctctatcctagctgtacccaaaaa
gaaacatggaacctttgagtctggcagcgtgaacaggacagggctcaccccaaagcgtca
ggcaggaagccggaggaacagaagagctttgaatacagcccatcccataaatatttattg
tacaaatggctgacagcctgaagccagctcagagcctcctctctccccttcacctcactg
ccccactagtggtcaatcctagagacttccggacacttcccactgccggaaagggacaca
cagaagacagccatccattaattggtctgggcctgaggtcaaaaataggcagtggcccac
agatgttttgtttggcctgcaagtgttttgttttgttttgttttttaattttaaattatt
tgccaacttttaaaagctggaagatttcatacataaacctaggccttggtcttagaagac
ggagatctggccacatgctgcataccctggctgacacccagttgccagtgccccattaga
cttacaatgaacctcaagccacacaccaattctgacaggaggcccacttcccacacactg
ctcagcctgtgaacactgtggcttgcagggcttgctgacttccaaaggggtagtccccac
tccatatacacaaaatggagccgaaagaacacagggtggccttgcagggcagcagtacac
actagctggttcacagtagttggagtcacacatcctggcccgtctaacaatcagtagtgt
cttcttcccttcctgcaactgttaacctcactggacttagaactgttctgtaggagacat
cctgggactatccataaggtacagtcctagggaggcttaactaaagagcaggttccaacc
gtgaaggtgggtggtaccatctcatgggctgtggtccccaagggaataaaaagaacaaga
tgaatggaacacatgtttctcctccccaccctctgcctctctccctcttccttccttctc
tctccccatcttcctgacttgatgcaaataagatcagccaccttatgctctaaccaccat
gctttctagccaacctcaaacaaacccttccttaagtagcttttgtcagacaacatgtca
caacaaaaagaagagtaatacagaagatgggtactgacgagtggggcggtcactgtgata
agccagactgtgtggcttgtgagacagtgtggaaaagtaccacaatgaaggtggagaagc
cctaaatgccatgagcagagtgttaacaggccattctggtgggaccctgggagaccagaa
ggccaataaaaagtcacactcccagttctggaggggagcaaggactgtaggcatatgggc
tagagaccattcatgtggactcaaggaaacatgctgtgtttcacccaagtcttactaggg
caaggctgaattcaaaagtaacagactaggttgtctggtggaggaaattccaagatagta
gagcatccaggctgtgctgcggccactttcatagccctttctcacacttaaggtggggta
ggaagggagaatgtggaaaaaaaatgtagagtttggtgaagaatcctactacatatgcag
agagtgtggctgtagcttcaacactttgcaatgggacagcggaaaagccacctcaaggac
caggccctaacaaacatggtcccagcttgtgatgatgctaatatattagaaaggagagcc
catgagctgagaacgctgcagaacatggcaacctataacctttccccagcttcaggcacg
aaggggccacagagatccaagcagggaaggctccatcttgagctagcagcagaacttagc
atcatcccacatggtgctggttttgaggatatcaggatatcatcaatgcacgtaccaagg
tttcagaaagcctctaaagccaggcactatgtggcagggtcagattccttccccaagagg
tgtgatggtgaagcctaagtttcagtggagaccctaagatactggagatgccaacactgt
ggggcatatgctgaggaaagctgtaggcttcacaaaggaaagccaacgtaagtagagccc
agatgattctgccacaagtgccacgtgccaaacacagagctaaagtatctggagttcacc
cttctgggtttttgtctttatttggcctgattttttttcttgccctgcccccatccctcc
ccctgtggagagactctgggtcactgtatattacaaatatataatgttttattattttat
aggggctcacagttaagaatctgggctttgaatttgtgagcattggagttgttcagattc
ggggggctttgagagatggactaaatgcactttgcattatgggatgaacattagacttta
ggggccaaggtaggaggttatgattcaaaggtgatgtatttaggtatgaagttgacagag
tgtaattgtgacagttaaatctgtcaacttaactacatttagaatcaaatatgagactca
tttttctgtcatatttgtaagtgaaatccttagagataggctgagacaggaaaacccatc
ctgaatatggaaggcactgcaccatgggctggggtcttggactaaataaaaagaagaaag
tgagctgggcaccagcatttctctttctttctctgtttctttctctgtttctctctctct
ctctctctctctctctctctctctctctctctctctctctctctctctctctctctctct
ctctctgctttctgacggcaagatgacttaccacctcatgcttctaccgccatgccttcc
catcatgatggactgtgttcccttaaacaatgagccaaaaccagaccttccttccttcct
taagacacttttgtcaggtcttctgtcacaacaatgagaaaaataacttaaagaatttac
tcccaaatgcccccattgatatcaagttccagggcctgagcattgctggggtagaccaga
tggctcatgccaaggattgtgcggcaagagtcctcagtatgtattctgttttctgtggtt
gcacagcctgctgatctccatgtgtgttctggcagggttagctccaaataccctgtagag
ccaTAGGACAGCCCTCCTGAGTC
Primer
(+)CTGCAGCCAGAGAGTCCAAA
(+)GACTCAGGAGGGCTGTCCTA


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