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Human element [ hs2116 ]


Position: chr4:174,601,312-174,605,985 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: HAND2-AS1 - FBXO8

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
aAtCTCTGGTTTCATGGGCCTTAcattttagtagggggacagataataaagaaatgcaga
catatattttatcaagtaatgataagggctgtgaagaaaatgaaacaaagtgatagaggg
tggaaaaatgggagggtgaggatgttttaaagaagatggtcaggaaaggtctctgaggag
atggcattggagtggagacccaagtgaagtgagagagagagagacaagcaaatccctgag
gggacaaagtttctggcagagggaacggcaagtgcctgagacgagagtgccctcggcatg
tcccaggcgtagcaggttggcgaactgcagctagaaggccttgagtgacagggagagctc
cctggaatcaaggtcagagagagaggcagaaccagtccacagcagactttaaagggttta
actttatgcgtgatgggaagacattggggggttcagagtaggggactgatgtggtataat
gtgtgatacgtgagaccagtgaaaaagaccctgtagctgcacaaaagagacttcaaattt
attatcgaaagttctactacacaaacattcatagacatttatataaaactatgaaattgt
aaaaaaggaatctaccagaaataaaaataatctgctctgtgtatggtctgtacagagtgc
atatataggtgggtaattgtaggaaatggaaaatagcaaattaaaatggaagattatagc
ctcaaaagttacaaagataagaaatatagcatttaggaactgaacactcaaatcaaagaa
atgcaatttatttatctgagaaataaaaggtgtggctaaattgagattttgcttttatat
tttaatgtctcaaggtataaagatatgatttaaacactctctttaggaatataaattact
gttaattgaattgtaggtcccgaacaatgtttagtgaatatttacagtgaacattttcct
cacactggggcatagtgactatctggtaagttggcttgaagagctgtgaggtagacacaa
tatggtcttaaggtattaactaatccaagctcctttttctgttcacagatgacctcttaa
tgctgtacataagagatttgggttgtaatattaattttgttgttagtgtgataggtgact
tgtagcaagacaaaataaggaaggtcatcgctaatgtctattgagtgcttaccctgtgcc
agcgactatgtgagctctgtgccttacattgctgttttaagggcttcactaatggctttc
tttaccagaattctttttgttatttatttttattgtcaaattataattatacatattctt
atgaggtacaaagtgatgtaatgatatatgtatacagtgtggaatgacggaatcaaacaa
ttaacatacccagcacctgaaatacttatcatttgtttctcctgtctaaatgcaattttg
taccctttgacccacatctccccattcttcccaggctcccaggctctagtaacttccatt
ctactctttgcttctataaatttgattgtctcatgtaagtgaaaacatgggctatttgtc
tttctgtgcctggcttatgtcacttagcataacgtcctccaggttcgtccatgttgttgc
aaatgacaggatttccttctttcttaaggctgaatagcatcctattgtgtagatatacca
cattttctttatccattcttccattgatgggcacttagatggatagcataacttgttgtt
gccagagttctgaaccaaatgagagggattctcggtcagatggggaatcaacatgtcact
tttatgatgaatgaagctaatatcagacaatgtggcaacaacaggcttccaaatgctgaa
tcctggtattacacagatttctgcatgtagtctcaggccatgctggtcaaaagtgggatt
ttccatatgaaggatgatctaagaggagcaggaaagggcagattctgtgggcagccgctc
ttaggagagagggagagaatggagctgggctataggaccctgcttcatctttcagagtca
ctagtcagggatatttaaggccactgaatggggaaaaacccttttccatggtaatggtta
tatatgctcatttattagtaattctcacagcaactctataaagttggtcttatacaattt
tacagacacagaaacagaggcacagagaagtgccacagacaacttgcccaagtcccccag
tgaggatgtggtggaaacagcctttgcatccagtcagtctggtctggcccctaagttcac
attcgcacccactgtaccctcctgcttctccagtcttttaaagctgagatttgttatctg
agaaaatgaaggggttagattagaaaaatctctaaagttcctttcaactttaaaatactt
taatatgctattaggtttcttgtaaaaatatttgggtgtgtgaagtattttaaagtcctc
agggaaaggataatgtggaacaatattatatacaacttaaaatgctattttgatgagaag
tcatagtaggtaattgtaacccaattctgttttcaatgtggaaaacttaacagcttaaaa
aggaacagacagatggaattttgctaatgtgtccaagaaggaaatatgatttcacatgca
tattatatgcaagtttatgaatgcagttatagtgtctggaacctggctaggaaactatga
tgaaaatcagtgaagtaaaatatcaaaataaaacattgcatgacaacttctaacggggag
caatggtgggacttttaataaaaccacttggggatattaatgtgatacgtaagtggctga
agggttctgagtttccctggtgatattcatatatcacagagtgaatgttaacgggcaata
actcaagaaatggcatgtttagcataccagtggagagatgctggagttgtgatcaccaat
ggtacattataacattttactttgagtcagaagtgagtagaccctagcttataatttcct
aacaacttgtttggagcaaagttttgggattataatctcaattaaggatggaatgtatgt
cttaggtaacaaattcacctttgtctatgtgaaagggtagggacattaccaacatatttc
caatgaaacagcttttggtgcattcatggtagcagagaatttactccacatttaaataca
ctctgggtaattaggaattgtacttttagcaggagattaaaaaaaactcttaacatttta
aaaatggctttaatagtagttctgattatgcaattaattgttcaaataacttcaattttt
atgttaaaatcatttggtagttggtaagtgtaaaagacctttattccatgcaatacattt
aaattctagaaaatgagctttcctctcatcttccaccaaaacgactcaaaagaatggcac
tgcctttactaattaaaacatatatttgataagtatgacttttttctttctaatatttcc
tttattcaggggttaaatataaattcttggcttgtatccgccatcctcttgagtagcact
attttccagaattattctgctggcatctgaggggttcattctgaagtagttttttttttt
ttttacctgtagttaaacaaagattttatttgcctactggaacattatgtatacttgctc
atcccaaaaggagtgtgtgaatgtgtttaaaactataagctgaaattatttcttaaaaaa
ttatggtatgaaggggatactatgattcttgatttctataaaaagaattatttcttagat
atacaattaatctctatatactataatttgcttctaatgataggtttattttattgatta
ctatctcaggatagaggagatgaagtcttaaggagcagagttggtgtattcaaaaggtaa
atgacacttgccaacttgccaacctggagcaaagtgacttaataaaataaacagaaaagc
accaggattctttctttattgcagtattacaagtgtaataatgtctctaaacatgtagaa
taaagtaaactgatgctaccttatttgactcctaataaattatgttgataacttgttaaa
aacaaatgattagcaagtagtatgaatgtataaatgagctgagatgtattaaaaaactac
taacatccagggtgtaatgactacagagaagacaagaaaggggatggctgagcagtgaaa
cttcatttgctacttattttgagaacagtgacctggacctcttgtgaaatattctcttgt
gatttctccacctataaataacttgctttgggtctgatggcttctaatcagtgaataatg
attgtcaaccgggcctcagttatcaacagcaaccacggaagcatttatggggcatttaat
cctcataacaacccagtgaagtcaggaatataattatcttcattttacccacgaacaaac
taatacacaatttaggccatttgcaaaaagatcatcaaataatgcaaatgtaacaaaata
tttattttacccctgctatgttttaggcattgtgctggtcctgaggatgaaacagaagac
agtctgtactctcaattcctgtatagtcagccttctgagagaaacagatgacttcccggt
cattacaatatagaggcaaagagctaatgcttgcAGTTCTGCCTTGGTTTGCTG
Primer
(+)cacCTCTGGTTTCATGGGCCTTA
(+)CAGCAAACCAAGGCAGAACT


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