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Human element [ hs2111 ]


Position: chr6:164,168,419-164,172,918 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: QKI - C6orf118

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
gtgCAGACAAGGTCCCCTCTACGgtgtcatcctgttctaaatgttgacatgagccctgca
gagtattcatattacattttgaaaattgtttccctcatgactgagcatttacttactgtt
ggataataaatcagatgctatccatcttggccaggagtgttaagaacagtctagaaagtt
ctgcctgggaaccccccgagtcctgtgcttcagttttgcctcaggacttggtgtctggac
acttgtgccctttctcaggtgagccccacccagatcgagggcatcaggtccaggaacagg
aggggcttccccagcttatgggagggaaaactcaacactgctgtcttcatagagatggtt
ttgcaattgggaatattctctttaaaaactcagaaaatttctaggtaaaacaagtaagtt
gtgtgatttttccagcaagcgtagaaaaaagccaaaacaaaacagtgcatgctcttatcc
ctccatcttaatacctctgaagaaacaaagcatgaaggtttcatattcagagttcaagga
agaaaagttgctctgtgatggttattattttaaaggtttgaagagctatgtatcccattt
gtatgtgtggtgagctttgaagctaaaatgcagagggatagagatgttgtccacgaggga
gtgccttagggttgctcccagagaccaaggcttggctggcagcatgcgggtctgactcgg
tgaccctgaccaccttaggtgtgttcacctgggagaggaaaccagggaggaacacggggg
acgtggggtccaatcttcatgttcctgaacagaacctgtacttttctggaccataaactc
ctgctcagctttgtcccctgggtttcttcaaagtggtcaccgttcactgggatgctcttc
ctgtgccttagcttggagcgggtcgggggctgcaaacctctggttctcatgggtccattc
tgtctggggagcatcaatcaggattatggtcccattgccaccaacaagcagaaaggagcc
acgatgaccacactgcatggcttgtttggtcctggctgtggagacgcgtgcacccttttc
acctctctccattagagaacaaaattaagtaagcagaggtctggacttaagtcttcattt
gctcttcgagctgtgccaccgtgggctggcttctgggctcctctggttttcagtttgctc
acctgtgaaaggagaataagagcaccgctggcttccctggatggtggtgagaacagagtg
aggtcatgggtgtgcagcatgtcccaagctgctcttgtcctaggaatgccgccagcatgg
gtgggtctatgtttgaacccaagtggtgtttactgaaaggttcagacccacctgggggac
ctgagcatgcttccctgtggctctctgggcctaaggacacgcagagcaccctgaaaacaa
gcctaacaaagtaaaaaggtgggaagcttgagaaacatcaggacatgcgagtggaggaga
ggaggcaggggctctgagtgtgggcttgcagcgtctctcctggtggcccagccactcctc
actctcagcacacaaaccggggaggccgcagcaaaaccaaaggcaaagaacggcctcctg
agaccttggtggggcaggggggctgggcggcctcgcagggacccctccgacagccacggt
gctaagtggcagagaggcctcctctcagctggctgagggcgggggctccagcagggctgg
cagcctgtcctggagcacagcccgtgcccaaagtggctcccacaccaagcgtggtgggag
ctgggccgcactgggggatgggactggctgctctggaagcatcgagaagtagtgtcctcc
agaggaggtagaaccagagatctcgcaggtacgaggggaacagatggggtgaggggccgg
gggatgtcactgctgcagatcgccccagtggaggccaggaaggcagaggaggcagacaga
ggggccctgtgggcacccgcagagcagttttataaatatgtccccgctgggacaccaaag
aatttgggggagggtggaagccctgcaggttcaggggagggttagggcaagacaaaataa
acagcatccatttctcttaatagtgaccctccttgtagaatctgcttggaatagccttgg
ggagcatgcattgtgagttacttgttattaatatctagttctcaaaatactttccccttt
caaaaagctgtgcgtatgcattcttgtcacccattgacagtgcctgccttcttgatagct
cacagacatcaaaatggctttttcttcactgtcagggctgcaaagcgcatagggtgggca
cattgccacggttggtccatagagcagtctactagcaaatgcttcagaagtttcattagc
taggagcggggaggatgttaggaggtgcaggattcttctctgtcttaaaggacttacaat
ctggttgggaaaataaaccctacacaggcaaaaagcaattaatatttgctttgaaattca
gagatggatggttccatggagccctagcacccttatcagagaagggcgatgccaccatca
caaacctcccctgataagaggaagagatgggtttgccattaccctgagcacagaaggcag
tttccctggaattctaatgcattgcaatgaggcttaacatatcaatttttaaaaaatggt
catgcgtctgtttgaaaacaaacctgagagttagctgtatataaatgcacacgcgtcgtc
tatttctaatacccacactcgctttatttctaggtttcctttttctgccccctccttttt
ggtgcatatttaacactcacgttattgcaaagcagcctgggatgagccacttaggaccat
cttggctcccattacacttatgtctcttagttaaggatgctaattctcgcaactcctcat
ctgcctctgtactcctctggattcttaaggcgatgctaatcagttctcgctccacagctg
tctcccacccctcacggtgacggtggggactttcctgcaccacggcaatccctcaagtct
gcctccctccctgtcctcccatccattcggcttctcttcaaccaggacttctcgtgggct
aactgcctggagtccagattcccctgttcaactgcttgccaagacttcgcgccaagccat
tcgtgctgggtgctctggagaatgaatgagggaaggaaccgagcaggcctgctttgttgt
gttgtagttgggtcgcttgacagcgccgtgtgtgaggcaggagggcatgtgggcaagctg
ggacatcatcacagcctccctcccacggcctggcaccccttcatcccacagaggccagag
tccccactcgcaaatgcctggcccagcacatgctgcgaagaggccgtgggtagtttcctc
tggaagcaattcattctcattgctgtctggggtttcctccctctgaatgttctgctgatt
tttcgccgcaccacaagcctcaacgcggcatgcgccaggtgccccaggcttcccccggct
gcgccttccttgctgtgagtgccacagcagccggtgctcctccaggccatggctgcaaaa
agggaaagggagaaaaaagattcgagtttgtcacagtggaacccaaagcttggtagtcgg
atgacatccccataattgaagtatttatgtgtctaaatatttcactgtcgtcggcaagta
aacacgaggtgcgtgtgggtgaatctttcacacccaggcagccgcctactcaggcgggcc
cacacttgtaaccttgtggcttttcttggaacactggaaggattttctctccttgagttc
ccattaatttaaatcaaaactaaagttcacggtgtctctcttctgctggtgacattttcc
acttcacacattgtcaacctcatttaacatgttgctactcggctgcggtcacctccgcgg
gaacggcacacccaaacagcagcagcttttcttcctgcccttcagactcctctcttcctc
ccacctcctcctcctccctcctcctccctccccgcagccctaatccaggcaggaattcgg
gcctgcgcggccctgcccaccgtggcagccagggatgtccagccctggtctctgttctcc
agggcgtttccacgggacccaggtgtcggaaatgcctcacaataaaatgaacctaaacaa
cgtatccctgtggtggagcagtccctggaaggcaggagagaaaggccagatggaacactg
aacaaaggaaaggaggaggcgatgatccccaaatgaagggcgactgattgtcctcgggcc
aagttagggctagagtaatattcggttgtgatgtctggagacatatttaaaaatacaact
actgttggctgggtgtggtggctcacgctcgtaatcccagcactttgggaggctgaggca
ggtggatcactggaggccaggactttgagaccagcctggcCAACATGGCAAAACCATGTC
Primer
(+)cacCAGACAAGGTCCCCTCTACG
(+)GACATGGTTTTGCCATGTTG


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