Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2101 ]


Position: chr20:31,563,918-31,568,870 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MAPRE1 - SUN5

Timepoints:
e11.5

Expression Pattern
cranial nerve (4 out of 5 embryos) 
dorsal root ganglion (4 out of 5 embryos) 
eye (4 out of 5 embryos) 
facial mesenchyme (4 out of 5 embryos) 
forebrain (4 out of 5 embryos) 
hindbrain (rhombencephalon) (5 out of 5 embryos) 
midbrain (mesencephalon) (5 out of 5 embryos) 
neural tube (4 out of 5 embryos) 
trigeminal V (ganglion, cranial) (5 out of 5 embryos) 

Embryo 1

Embryo 2

Fasta sequence
GGATGAATGATTGGCAGCTTaattccctggtggggagaagacatgggctggtggcggggc
ctctgggctctcacagggctgaggacagccacaggtaccccacagtgcttatcaaacttg
ccagcagtgaccttggggctaaagctgacttgggcacccccatggtgctgttggaggagg
gcccgtggatggtggagatgtgcacccttgtggagctgctgctgtgtggacccaatggtt
cgctgcctcctgctgctcggactcaaagaggtgagtgctgcatgaggcaccctcaccctc
cagctcctcccctcactgtccctgtgccataggccctgccggactcctccccactgaggg
gtgagtgactgagagcagcacagacagggacagagcttcaggccaaaggcacgtgatggg
aatggaatgatctcagcagcaggcccacaggagctgcacttccaggcagagatcacagtt
gtggggtggaggtggaggcctgggagggccctgaggggtggggcgactcctggatgtcat
ctgcacggaccttgggggaccgaacaaaggatgacaaacgtgggaataaagataaagaca
aaagagtgtatttggaagaaggggtcagggggctccttgcttctagtgaacaagggctct
tagctttacagcccttcgcatttgattgggtaaaggagatagggagaagtgggggtggtt
gtcgatcaggggcttaatttacagcaggcttgcaagactgcattcttcaaacaataggtt
ctagatgtcccagtagataacctcaatgagcacggtgccagggccctcagcaaaccttct
ggcagtaggcgcagtcgtgagtttgcccacatcctgcattcatgataaacagtttgctgt
ttgatcatatagccagtggaatgctgagttggtcacgattcctttggccttttcagctcc
aaacacctgggagctcctctttgcctcacccccaatcccccttgcaggatctcatcctca
gagccatgtttgtggttgatggatgcaaactcactgtctctgtggacatgaagagatgag
cagaatggctgcaggcacaacccagacttcctggggagcagaggttaggcagctggcagg
ctccacagtcacagttgctcaggaagtcctttcttattgctgttgttcccaggaggctgc
ctctctttctgtccctctttccctgtggatccagggactggctccaaacctagcagggcc
agagctcactccctccttgctcccatggcgtctggtcacattgatggaaacggaggctca
gagaagttgagacttgccctcagccacacagcaagcgaccagggctgagtgctggattcc
tgtcccaggctgttccaaggcagtccctcttggggagagcctcagagatgccctttctct
ctgctgtgcctccctcaccgggtcctcaccttccatgaggaacgttcctgtaagtgaggc
cagggcttggggattcgggcacattctctctgaaggatgaagggttgctggtggagggag
atctgctctgatgcttcctccctcaccagcccaggtgtcagacctcagcctatgagctcc
caagctccagtgtgacctcctggtgcccagcactgatggtcagctctgacctggacttcc
tggtggggttgtggtcgatagcactgccctgcctgcctgagccccacggccgacctctga
gctagctccaccggcttcaggaccccacacagtgcccagcaggccactcaggcatccaca
cctgaatggaaggcgaggcgttggtctagtccttcctgcatgaaccaaggccctgcgagg
gatagggactggtgagtggtcacatagctgggaggtggtcgagctgaggtgtcacttacc
cagcttccccctggcagtgccggagtgctcatgtcctgcagcccagcagcctgcatgtgg
cagggctcttgtgatcaccagatcctgtagcgacctctggtctcgggaaagggggaatga
gctagctttgcctggtgtggacaccgaaggcagaacctggactcggtgcctcagatactg
gctgagggcccccagctcatgagggcgagggagaggtatttggagggtgatgagaagggt
ggtcagtgtgggtctgatctcagtctctctgaaggcagctagctgggagtccactggaga
catagcccaaaagagtgcagcagaaggctctgattcttttacgtagattagcctgatttt
ggccttctaccccataatataatttaatatggaaacactccttaacagctgggagcagtg
gctcacgcctgtaatcccagcactttgggaggctgaggcaggcagatcacttgaggtcag
gaattccagaccagcctggctaacatggtgaaaccctgtctccactaaaaaatacaaaaa
ttagccaggcgtgttggtgcatgcttgtaatcccagctacttgggaggctgaggtgggag
gattgctggaacccaggaggcagaggttgcagtgagaagagatcacaccactgcatccag
cctgggcgacagattgaggctccatctaaaaaaaagaaagaaaggaaacactgcttaagt
acttacaggtaaatttctttaccttgctctgcatgagattgccaccctgtgtcacttccc
aacttgctggcttggccagggcattcctagaatgttttgggggccagtgggtatcatggc
ttgcctggacatggtggtggggataggttctaagtcttgatgactttatacttttttttt
tttcgagatggagtctcgctctgatactcgggcaggagtaccatggcgtgatctcagctc
actgcaacctctgcttctcgggttcaagcgattcttctgccatagcctttcgagtagctg
ggattacaggtgtgcaccagcatgcccagctaattttttgtgtttttagcagagacaggg
ttttgccatgttggccaggctggtctcaaactcttggcctcaagtgatctgccggcctct
gtctcccaaagtgctgggattacagatacaaaccactgtgctggccgactttacactttc
taactctggccaagattaatagggttggtgtttatttatttctttctttatttccccctc
tctctctgcccaatgtcctgggtatcagctggtgggcaccattgtgaggccgatagagta
ggaggtggtgtgcccattgtgtagatggggaaactgaggcccagagagggccttggctgg
actccagggctcccacttctcagcccttgcttttctccctgtccatttatggacgagcca
ccatgagattgtcaccctgagattgtcttgtccagggaatgctgctggtgtgcttgtgac
cctgaccctagcctctgtgaggaccctcaaggagtgtcccctggggacttgggtgagggc
aggctgtgtcagccccctgcccatccacagcgggccttatgctgcaaataaacgtcactg
tttgctccaattcctagaacctgaacctgtgccgtctcctgtgccgtcaagagccctcct
gttcactcacccgacttctatttatggggcagctcttgcatgacaggctctgtgctaggc
tctggggaccccacttatcacacagccggcaagagcctttcacactggcatcctgggggc
cttaggccacttctggcagggagaaggtgaggacaggcatctcctggtgcagatgaggaa
agtgaggctcaaagactgactcccttgggcactcagtgaaggggcacaggccaggggaag
ggcctaggctctgtctcatcactgggcccttgccactgtctgtccaggggtctcgtgcag
gggtctctgagtctcatcactgggcccttgccactgtctgtccaggggtctctgagtctc
atcactgggcccttgccactgtctgtccaggggtctctgagtctcatcactgggcccttg
ccaccatctgtatggggtctcatcactgaggctctcgccaccgtctgcccaggggtttct
gagtctcagagaagcagcctgccccagccatgcctggtctggcctccagggattagcgga
ttagctaaaacctcagggcttgaactgggcgtaacggaggcgccactctggcggccctgt
gggtggttggcactctgcacctctggttcttgtcttggtcgccttggatcccaccctggc
tggcagccgactcctctgctgcagtccagtgggtgggctgagtggcgggcaggcggccag
ccttgtgcattgtggacctggactgggggtgggtgggagggagacttttgttctcctgct
gccccagaaacgagcccctccccctgctgggctgaatcaaagtcctattgtgggacttgg
gtgagactgggtccctcgcagggcctcagcctccttgtctacgcagaggggctattcaac
tgcactgtgaactgtaatgctccatccagggactgctgaccttggaggacaggagggagt
gtggggaaggggtgggtggataaagggtacctgatcatctggtcagggggctgagctgca
tgcagtggggctcctcggatgtaatgacagaactcccattcattgagcgcctgtccattg
tttgtgcgacagtctcagccatctgggttgggggagggggtgggccaccatctgctccct
tgggcatcactgtaagaaccagggttcaaccctctactcacggctccacggagttggctc
agccaaacttactgggacctgaatggctgtgggaagagttgagggggggaaccaagcatt
ttggggcctggcaggtctggattgggggtcagagcatcactgtgactcactgtgtgacct
tgggaagctgccACATCTTTCTGTGCCTCGGTt
Primer
(+)GGATGAATGATTGGCAGCTT
(+)cACCGAGGCACAGAAAGATGT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.