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Mouse element [ mm2098 ]


Position: chr9:63,529,570-63,533,566 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CAGCAACAGCACAACCTGTCaatcagcctgcacgggagaggaaccgaactaggactgacc
attccctggagctgaggctccatcacactgaagagggctgcatggtggctagcctccagc
ccaggctctggaattgatgaggccactcagagaagctcacagccaccgctggcttggtag
gatctggcctggacggagtactgagaacagaggcgccctgcgggatgctccaaacttagg
aaccatgggactctggagcaggggacacttcagcatggtcacgtggtgtttgtttctcac
aaggaaaatgaaaccctgagtggagtctaccgaggacagctcagagggagttgtaatgta
ttcttttttttttttttttttctttttgagacagggtttctctgtgtagccctggctgtc
ctggaactcactatgtagaccaggctggcctcgaactcagaaatcagtctgcctctgcct
cctgagtgctgggattaaaggcatgtgccaccacgcccagcgtaatgtattcttttactc
cagaaagctctggcctgaaaccgtcaaacatgagaaatgcatacactgaggcgtgttccc
tttgctcaggcaccactccccagcctcaccccccaccccatgcaccctgctatagacctt
catattgctgcagcctgcctttcaggaaagccagctgcttggcccaggcccagagaacag
cctctccaactgtactcggtgtcaggatcagggttgtgtgcaacagtggaaggggatgtt
aaataccagctgagagaacctcacagcctgataagaaacaaggaggggcggacgcccagg
cccatgaagacgacccgttccttccttcctacccaaggcctccctccaaactccacctgc
agcacacggggcggcaggcagctttacacatcaggtacagccccttgaacctccccagtg
caccccacattagccacagtgttccactacctgggttgggtgggaggtaaaatggaggag
cctgtcacaaaattctaacctaactagctgcccttcatcccttaaggaggcagctattgc
ctcttcctgaagagagaacagacctacgcccaacatccccgccatggaaacatctgctgc
tttaaggaagataccctctgtacaacacaaaacacagacagaaggaagataccctctgta
caacacaaaacacagacagtttgtgaaggccccaaacactgctctccttggtctggactg
agccctctcagcccaagccatgaagagccctctaacctcactagcactgaccagctggat
gccctgctcacccactgcaggaagagagtctgttcattaggtctgcttctattaaagtgc
ctactatgtgcaaagcacctagtacccacatcttcccaatgtcctttgcatgagatcagt
tctataggcagtcctgttttgcttcaggctctctttctggaactagcttttcccacctca
ccttgccttaacgagataactctgagcggctgcttcatacaagcaagtatcacaccaagt
actttataaataaaactagcttaaatacattagttctgcaggaagaggctgcacttacca
aaagaagatcatgaagttcagagaggctcactgtcacccaggggtcacaatgacaaagga
cagcagagtttaagaaagatcagcaaaggacaagcctaattttcacagtgtgccgccgtt
ggtctccaggtagccatggtggctgaggcacaggttctgagtctggttctctttgctgct
cattagacacattaagcaaggtctcctatctcccagggagtttcctcgtcagtaagaggg
gacatttgaggggcttctcacacaggtcccctcctcaactcagcataaagtgctacaggc
agtcctcactcacgttctagaaaattccatccaattctgagactcctggatttcagttat
tcctagaacgagttaatataagaccagggaatgtaagaacttctgaaaacaccaacatct
ggggacaatctatctatctatctatctatctctctctctctctctctctctctctctttc
tttctttctttctccctttctttctctttcttcctttcttcctttctccctttcgttctc
cctttctttctttccttctttctttctttctttccttctttctttcttttttcctttctt
tctttctttctctttcttccttccttcctttctttctttattttccttccttccttcctt
ccttccttccttccttccttccttccttccttccggtactttcataggtgtgtacagcta
tgagatcaggctgaaggagacacaatgcccttcacaggcttgccaagtcctgtcaccctt
tcttgaaattctcactttttaccaggcccactggtagagcttgcaataccagacaacctc
tggggaagctgaggcatgatggctggaagtctaaaggcggcccaggcaacttaccaagac
ctgtgtcaaaactcaaaagtgtaaaagcaaaatggcagggagagggggtaaatttcagtg
gcagcagacagagcgcatgcctgacttgcatgaactcaacgcatggaaggcgtgtctatg
ggaaggtcctacagggtggcaagccaaggtcaggcaagggagagaagcaggaacaagatc
tcagcagactgacagagtctatatcatacagacaatgcatgtcactcctgatagggcccc
atgagccagtcagctaccagctgggatgtaacttcctctgtacccagaaagtgccaccca
gcctggcacacacagacacagcaggcggcgaacacgttccctcagtgatctgactaagtg
aagacatggggacaaatgaatgctaaatgaatatttggatatttttcaaagcacactttc
agaaaatagaaaacaacaacaacaacagccctataataaactctttcaaaatggaaacaa
aacatccccaaattcaaataaaataaaaattttaaagtcccaaaatgtcaacatccattt
ttaaaagattttttttttttaactacgtgtatgtctgtgtcggtgtgtggttatgtacac
atgagtatggtgtccactgaggtcacaaatgaacgtcaggtcccctgcttatgggctgcc
ctgggtgctgagaaccaaactcctgcccaattgaagagctacaagggctctgaaccagtg
agccctttctccagccccaacagatacatccctttgtatccttataatgaaatgccactg
agccacagaaagcaattcactactgaaacatacacaccacacacacacacacacaccaaa
tctgaaagtatgctaggtgaggaaaaccagacaaaatgaacatgcaccacgtggttcaac
tcatatgaaatttcaggagacgcaagctaaggcacagtggcaagcactggccacctggca
ggccaaagaagggtgggtgacactaccaaagaaagaaggcaactttgaagtgtcatcgtc
ttgagtgttgcaatggcttcaggtgtgtgtacctgaacataaaaagcatcatagtgtata
ttttaagtgtacactgttgactacatatcaaatttcacctcagttcagaggaaagactcc
ccaaaactctcttgggagctaaatgagaagctagagttttaaaggcacaaagcaatcaac
tgactaggccataggtggcccctgccttgccttctgcccagccaactctgaaaagagcca
gaactgacactctagtgatctggaggggaaggcgtagcctagagtgatgaaaggaacgtg
ctctgaggcgttctctgagccaccggccagggactgaatcctgtgctgtcaatcaacgtg
gctgccccctgtccacccacagagcttcttgtatgcatgccatgagtcccctttacaaga
tctttggttgttttaaaTGCTAAGGTTCTGAGGCTGC
Primer
(+)CAGCAACAGCACAACCTGTC
(+)GCAGCCTCAGAACCTTAGCA


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