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Human element [ hs2098 ]


Position: chr3:61,793,891-61,797,865 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: PTPRG(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGAAACTAAAGCCAGAAACTAGGagaaaaccctccgattttttgtttggttatttttaa
gtggagaagttacaaaggtgttagctgttaagatgtggagtgaactggaatccagtggct
ctcaaatcttgcagctcatcagaaacccctggtgaactttgtacgtggcactcaccccta
ttccttaactgtgaaatctatacatttttttttcatccaccccagataaatcatatgtag
gtgggctcttggtccagtttgggaacccgtaaaagaagttatcaacctcatcataacctt
cccaggcaggaatcaatttctttgaatataagccattcaaattccataatatgatactgg
ctctaaaggcacatttaattatgtaggacacaccatccctttcgcaaaatcgcacaaaga
tttcaacttaggcctaaaatctttggcacatacgttgcactgggcacggatcccttggcc
tagataatactgaattaaactcctccctttcctgccctcccacacagaatttggccagag
aagctcagtgaaggttattcttaaacccatccccgttgttcaaatctggcagtaaaaaag
gctttacaacttgggtcaactcctaatggggccttttgatccaagtgctttaaagtttag
accttttgtatctttgttgataaaaactgaggtgtagtataccattaaaatttttaaaaa
attatttctactgaacctgttggatttaatctgtttttgctatctagtaggcttgtgacc
ttgagcagatgacttaactttgccacatttttttcttttcttgtaaaatgggggtaatat
aatccatagagttatcataagaataagtaaaagaatgtgtaaagtgttagttcactgcct
tccacatagtgaaggcccagtaactgttgtttcttattattatcacggtgggggaggtta
gtgggggaaagttacaaaatgaataagcagcagactttgccttagtcaagagcttgcatc
ctcaaatttggagtaaggtataattatattaccatactagaagtaggaaggattaaaaga
agaaaataaagatgcactcttttttcagagaaaaatgtgatcactgatggctttttgctg
catcttgaggggagacattgcccatgaaacagttttctgagctgagcccagaagaataac
cctaaaggagtgggacagatagaaaatccaactggaagaggaagtggtatggtgtactag
tgtctgacacacagaagatacccaagaaataagggttgaaaaacatgaggctttatggag
agaaacttacatttgagttctgatcctgttaatttctgtaaaataagtattataacactg
accacataggggccagtgtggacagtgaatactatatgtcatgtacctagcaggttatct
ggcacgttgtaagcttgaaaagaaaataatatagttattctgtattaatatgaaggggaa
tagaaagacataaacttgaaacataaatgtggaccagataattaaggcatttgaatcctg
aactaaggagcttagattttattcacttgacagttgagagccacggaagctttttgagcg
ggtgcacagctattgaagctctgtgctctcttgatttcaaggtgattaagcagaacagtt
ttcccccagctcctgtatcagggaggcagagctttcccagaagtcccattgcatacttca
cctcaggtgtgttcttggaattgtggccatgcccaccttatagctgcaatggggggctgg
gaaactgtttagcctgttgagcctctgtagctggaagtgggctgtgcctgcacagcctaa
atggcttttggtctgtggccaggaagccagtgatacttgcaactgtgagcataatagcat
gttggaggccaaagtgtactctacagggagtgcaggataaaataagaacaatacgactgg
tacagagaatagaggaaagggtagaggtttgtatgaaagctggcaaattcagttctagac
caaaaatgagtttagggtgcaggtaggatatccaggaagaagtgatgcatgggcaggagt
aatttaggattagagtgcaggactgaaagtattgatcagtgaatcattgatttggaagat
gacagtaaaaccctaagaatctgaggtaaggaaggatgagagaggaatggacaagaacca
gataacaagcttaaaggaatgatttctttttaggtgccctgtataagcaacgacagtgcg
aagggataccttatttagcattgtttaaacctctttatctgctccataggcatatgacct
caataaaggcagcagtgtgtttatgatgcagacccagctagaagacaagttcccaggtct
ggctacccacccctactcttggccacccaactcctacctcttttggacagatttctcttc
tcagctctgtctgtgtaatgcaattgtccctacaatggcctttgacagagaagtcatgga
gatccaaagaaactaattagaatgaataggcattttttataagtaattcgggacaaatgg
agaatccagtccttaagaagggttgtaatgagggtagctgaatttgcttttgtgggcttt
tactttagcgttccaccatcaaggtgacatcatatgatgtaagaatgagtatctgattgg
ctacctgccagccaatgagggttcccccttgcctacctgtgttggggagtgcaaggctgt
caccaggagggcaggttagggtgaatgtggcagcccaggtgaggtagacctgatgattgt
tcgaatgtgacactttctccctgtcatagcccagcagcccctttagtttgtgactctgct
gtgcctcccaattaggcctgctgtggacatctcacttctggctgaactttgggctgggtt
ttgtgatgctctttggtcagtggaatgtcatggaaggcccatgaatagagtgcttgaatg
tgcttgcatgactttacttggcctctctgttctgctaggtaccatgagaaaagcatgtcc
tagattcacaggtggaacttcctggccccaacctgttgcttaactctcagtcacccagtg
tacccaaacaccagtgagcaagaaataaatgcctactgttgttcaataccaaaatccttt
tttcccctcttgcttttggtcccacagtattgttgcagtagaaatctgaccaacacagca
gacaagttgactaatatgtctgctctttggccagaaaaccaacaagagccagaatggaca
gtgatgatggaaatgaattagttgcatctagggccatgtaacttgccctccatttgacca
aagctgaatttcattgaagtgtccattccatcatgcctgagttctatattggaaaatgat
ctgctttttcacaaaacacaacttcagctttcatatcctgattaacaaagacaatatgca
ttattagacttaatttaaaggtgtaatcagccatgcgagtcagataagggaaaaaatagt
accatggaccttttccaaattcccacaggcttaaaatataaaaattccctcaagagtgct
gacagcataccttgcctgttattacagcttgagttttattttgttcctctgccagtacca
gaataaaattaggttacaaatcagatctaacggtttagattattgttcatcttgagctct
gcgctttctctccatttgttgtggcatagcagaaataattaaatttattagtaggcctgt
cttcaaaaaaaggcttttatttcaaaatgtgcttgaggacatagtggggagcaccatgag
ttaagccttagtttttcaggaggtagaactgctaggatataaacgtgtggttttgcagga
tgaagagatgcttgtaccccaatataacgcattcttactgcaaataacaagtttTCTGGC
AACTTCTTCCTGGTa
Primer
(+)TGGAAACTAAAGCCAGAAACTAGG
(+)cACCAGGAAGAAGTTGCCAGA


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