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Mouse element [ mm2096 ]


Position: chr9:63,751,771-63,756,457 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGGAGATCTGACAGCCTCGTcttgtctctgtcagcactgcacacacatgatgcacatatg
gacgcatgggccaacattcacacatataaaattaaagtaaataaacttttaaatattata
tttgattcccactgtagtgcttcctccagtggaggggagcaggggagaggggtcatggcg
ggtggggaatgaagagaaggtgccttgagctgttttcatctggtctaagacaaaagcaaa
agggaatcacagtcgttgaacttcttccatgccaggtatgtcacacctgattctatccta
tccttgcagcttacagttggcattattcaccccatcttacaggcaaggagattggggtcc
agggaagttgagagacatatctaaggccacacagcaaatgccggagtcacccctttatct
gaggagcacacatctcatgattgcctgaaacttcagataggaccaaaccccataagatac
taagtctgggggtatagtctaacaccatgacgggcctgggtttgatcccagcaccataag
gaaagataagtatggcttacactaccatattctgagccagaaagagctctgcagagaaat
ctataaatcaagtagtaagagattacaaataattaatggtgatgggaattggggctggag
agaagggttaaaaggacttgctgctcttccacaggacatagggtttggttcccagcacct
aggtggcagctcacaccctctaactccaattttagatgatctgatgcctcttctggcctc
tgtgggtactgcatgcacacgaatcccatatacatgagggcaaaaccacctatacacaca
caataaaaaatatgttcttaaataatgatagtgattgtggtagtgtgaatgaggatggtt
ccacaggctcatgtatgtgagtgcttgatccccagtgggtgggactgtttgggaagggtt
gggggcgtggccttgttggagagggggagtgtcactggggatgggctttcagggttcaat
agcccacaccattcccaggtagctcaacttctgcctcctgcttataggtcagatgtaaac
tctcaggactcttgatgacctgactatctgatgatcatttgatatttccccacagtctct
ttttttgttgttgttctctgtgttggtcaggctggataattgttatagattcctatagat
gttcatgttaatggactccactgctcatctctatttgctattgaaacattttgttgtatt
tttcatttctataatgtgagtttagttcttttatcttctggttacttcttcttctccttc
tccttctccttctttttagtttttgagacagggtttctctgtgtagcactggctgtcctg
gaactcattctgtagtgagtgtgtggctggctttgaactcagaaatctgcctgcctctgc
ctctcaggtgctgggattaaagccgtgcaccaccactgcggggcttctggctacttcttg
agatgtttcatcttttatttcacccccagagtgtccaccttattacctagagtgtgctct
taataactgcttttaaatctctgatcaacacccgtgtaatgtcagagttagtatctatct
tcctatgtctgtctgtctgtctgtctgtctgtctgctctattcgttgtcttttcactgca
aattgagatttttttgttgttgttgttgttgctgttgttgtttttgtttttcgagacagg
gtttctctgtgtagacctggctgtcctggaactcaactctgtagaccaggctggcctcaa
actcagtaatctgcctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccac
cacctgggaagatttttttttagagtttttcatattctaagtttagattgtatcctagat
gtctaagttatttattttttatatgtcttagctttctttttattgatgagataagacact
ctggtcaagaaaaaagaaacttatggagaaaagggcttatttcatcttatggcttataat
ccagtgttgagagacacgaggcaggacctggaagcagaagctgaagtagaggccacggag
ggtgctgcccatgcctttttccccatcatttgctcagtctgcttttttttttttcctttt
taaaaaaatagaattctaggaccacccccctcagaggtggcaccacccacagtggagctg
ggccacatcaaccattaatcaagaaaatgccccacaaaccagtctgatggaggcaatttc
tcaacaaggttcctttttcctaagtgactctagttaacgttgactaaaactaaccatcac
tttaggaaaccatgggtcttatttaaatccaaagaaaatgtggatacacagaggtagaga
gcttatggcagacagtgacctgggatggggctaagctacaggttccaaccaatttcctgc
aaactcgcgttcagtttttcaaagccttttgctccttgctttaaggaggttccaaatgtg
caaacaagtggctagtcacacctgcaggacagcccatcgccccacaatttaggtctcagg
ccagaaaaccaaagcacaactgcccttctctaacctatgctacactgcccttgatgcttg
gctcaagggaccagcatctcctgaccctagtcagggtagtccttgggggtggtaagcaag
ggagttggcagtaccgaggtgggtagaggcatgcgccagggagatctgctccttggtgtc
atctgctgtctggatatgggaggttggtagcctgtgcgagtcatggcctccctcagcccc
actcaggcccttcctcctagccttagcccctcctcctaccttcttaagtcttgtctgtgt
cacactccagcacagaagaaacgcaatgtcaagttcacccactccaggttgtgagaaatc
ctggcacaaacatctgttctgctgtccccagttcagagagttcacctggcagggacattc
tgacgccttcccaggaagacttcctcttctcaggcctggccttttgctctgagatctgct
gtaacctgggacgccaggctcctcctatggctttggctacaacaggagcccaggcctccc
gacaagtgcagcttccttgctcactcttccttgcctccccttagaggcttcatctagctg
taggtggtgcgtttgctgcacgtggatctgcgtccagatccccgcccccgcataaaagcc
agatacagtgaggcacacctgtagttcctgggctggggaggcagagataggaggacctct
ggcacttaggccagccaggctcgcacaactggtaagcttcaggctcagggagagaccctg
tctcaaaaaataatgtgaagggctggcgaggtggcatagcgtgctgctcttgcagaggac
ctgggcccgttcccaacacccacgtggcagctcataaccatcctaactcaagttctagat
ctgatgccttctggctattgtggatgccacatacgttggttacacagatatacatgcagg
caaaaacccaaacactttaaataaaaacaattcaattcgttttttaaaaagtgaatgtgc
tggcaaggtggctcagaggtgctccatgccagaccatctaaatttaatccctgtttttca
catggtggaaggagagaaccgattctcaaaaagttgccttctgatgtccacacatttgaa
cagagagaaggaggaggaggaaggggaggaaggaggaggaagaagaggaggaagagacaa
tgcccagcacagatctctggcactgaggaacgtaaccaaccaacagctatgaacccttgc
tgtgtcctgtacctacaatggtagtgtgtccgccagcttgctccagtcagtcggtaacac
ccgtgtaaggtctggggatcctcccagactcctccatacctccatatcccatatctgcct
cagtctcccacagatgtgtcccctgagaaatctctatccgactcagcatctgcttctcag
agtaagagaaccaggactcaacacagctccttaccctgaaggctgtcctgtcatgagacc
tgcctgggcttctaaggttgtgggacactcatggccacaacagcatggagctgacacatt
gaacagtaggtacacactacatcacatccagggactggatgcaggtcttttttccttcag
cacccagagctcccaccccacccagccccaactccagaaaccacgggtcagcccctcttc
cccaggtagaggtggactagacctgggctgaggcagccagaagtcaaatagaaacataga
gtcatatcttcattaaattctgaattgcagccaggcggtggtggcgcacgcctttaatcc
cagcacttcggaggcagaggcaggtggatttctgagtatacagagagaccctgtatcgaa
gaaaaaaaattctgaattgcattgttcatgaattcatccagcaccatctatgtgacaggc
acggtgacagcatgtattctatttctctgatgccagcttcagagactgttggggaagcag
agactccatttgaacattcattctcagtgctgtgtgatcctgaacaagttactaagcgtc
tctgagcccatttctcatctacgtaaaacactacagtagcagacactAGCAGATGTCTCC
CAGGGAT
Primer
(+)AGGAGATCTGACAGCCTCGT
(+)ATCCCTGGGAGACATCTGCT


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