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Mouse element [ mm2095 ]


Position: chr9:63,729,602-63,734,425 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAATTCGGCAGAATGGTCGCtggccttgtggaccctgaagctaaggaacacatcccaggt
cacaggagtatgccttctagttcccaagatgcacagctcggcccctgcaggttgagtgaa
ggaacagcagggacagattccttttaactggggtaggagatggctacatgtgtctgcacc
tcctccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgcgc
atgcgcacgtgtgcccgtgtgcctgtgagcatgcatatgtggtcttcatccatgcctgac
atccctctctatggctcgctatggcttctaaagcaaaagcttatactgggcaaatacaaa
tccctttcccagctagagagggggttgtgcctcagaatagtctgttcctgctccttgggg
aacttgggttttgcctaggaaaggatggcatctttcacgaaaatgccttggaggctgggt
atggtggcagacacctttgaacccagcactcaagaggcaggtggctcactgagagtttga
ggctacactggtctacatagtgacttcaggccagccaggactccagagagactctgtcta
aaagaaaagggaatgggttaggtcatgagtttggtgacactatttggggaaattatagaa
ctttaggaggtgggtccttgctggaggaagcaagtcattgggggcggggtttgatagttt
acagcactgcccacttgaagttgggtctctgcttcccatgagtggttaagatgtgatcag
ctagttccctgctcctgccagtgtgcctgcctgcctgcctgcctgccaccctgcctccct
gccattaagtactctccctctagaaccattgggcaaaatcaactttcttctaataatctt
ctataagttgtttttggccacggtgtttcatcacagcaataacaacgtaaccaatccatg
caccagcagttccatgcctgggtacacaaccacagcaattgaaagacaggtcctgaagat
acttagacacttgtgtttacagtggcgtacctcaaagtagacacaaatgggggccgatca
gatgcttatcaatagaggcagaaatgaaccagtgagcaatgtgggctgagtagacagata
acaatggcagatagacacaccatgggatgttactgagccttaaaaagaaagaaattctga
cacatgctaccatgtggacaagcacaatgagaacatcctgctatgtgaaataagctgctc
acagaaaacaaaatgcatgattctacctctatgcagtacctagaataatcatatgcagag
aaactggaagtctaatgtgaatattagggctgaggggagaagggaggagttactgtttaa
tggattcagtttcaatctgggaaaaaaagagaaagctctagagatggatttatggctctg
attgcatagtcatgtaaattacttagtatgactgagctgagctctttccagaggtttctg
ggatgagttttttaatgcgcattctcctgaaattaagaacttgggaaggaagactgggca
agatggcgcagcaggtaaggggcttgctgccacacctgaggaactgagtttaatccccag
gacctatgtggtggaaaaaggaagctgagctgattctgactcaacacacacctacacata
cacaccccaaaagtaaaaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaag
gagaacaaatgtagtaaaaaacgcactaggctctgaagaggcacgaggtacgtaggaact
tgctccagataccaagtgtacctcagaatccagggacaaaactttctgagaaccttcgtg
aacaacaactccgtaataacgacttgcttcgcaatgcacaaattctttccatttcatttc
tttccgttggcctttcctttcctctccaaacatggtttttttccacctggaactgcttat
gactactgtgactttaaagttggcgcacttttgcaaatccagtgagttatgttgcgtgtt
aaccaaccatatttgtcctggccaaccctgatcccaaaccctggttccttagttctcata
tcagccaccagatgtcagagaacccaaactatatggattatggcaagtactgccccccgg
tggctacaatgagatttgcaggcacagcttgttgaggacagtcagccaggactcaatgca
catccagattgaaaagtattctctttgagggattgcagaaggctctaactctacctttgt
gccttgtcgtatgtatgatcattctccagccctatgctataataggtttgagtcctgagc
tggatcaatggctctctagtgacttacagaccaaggtagaaccaaatgtcccagttcatt
ttgcttgtgccatttccttctcccaaactcagcttttaaatggttcactcatgggaaatg
tctcatggccttgttgctggctacaactcggttgctagctgcttccacatctgagcctcc
tcatgccatggcatctttccaacctagattggcaaaggcattgctacctacgtaggaaac
tcttctgcaattcacagtagtcttagtttatgagtggataggaaaaggaggaaggaaaga
aggaaagaaggaaggaaggaagggaggaaggaaggaaggaaggaaggaaggaaggaagga
aggaaggaaggaagttagtggggattccctaagaaagtactgcccgcctagaaactttgc
tgaagagatgcactgcacacgttgttttgatgtctgacaagcctttgcctaagtctttct
tgttagtttgcgagcagcgtgcggagatggggcagagtgagttcacacatgcagactcac
agctggctaatcaaccacacgtggaatgcggagctgtgactggaggggggtttctggtga
aatggtgcaggctcatcttcgtgtctctccgtgctgctcttaatgtctttctgcactccc
aggcatcaggcagaagcatttgactgacagaaatcccaactgcaagagcatttaatgggc
tacaaaaagataggcttagcgcaataaggtgacatttaacagacaaatgacgccaagttc
tccatttaggttccaacagccaactgcctgcacacaggacagggacattgacttgacgga
gggttcttatttaaaatccctgtggctgattcctagctgtgggtgcacagtgccaagaga
actactgtcaactcagagtgagggtggccgcattcacaggccaccccttttgggggagtg
gcctgcagcctgagggaagggctgccatctgctgtgcttctgtgtgcctgaggccaccat
tgcacctgacatcaaggtgagggttgccaatagagaaaatgaaagcagggcccattgcca
ggcttgggaggttctcttcaatatcagaatgattttcatgtgtaagagagatccaggacc
caacagtagcaggatttcatcccctttattctgggaccaggtggagtttgtcattaaagc
catttcctaggggctctgtcctgaggactctatacctctgacacagccacagccactcac
cctagggttcacagtctttcccttgtcacttgggacaaattctttcattcctctggatct
gccaattcaaaaacaaagcaaagggcttgggagatagctcagtcaggaagatgtttgctg
agcagatgtgaagacccatttgagttgctaaagtcctcatggggctccacagaggttctg
cagatattacctctctctctctctctctctctctctctctctctctctgtctgtctctct
ctctctctttctcactcggtctgactccactggtgtcttggccgttgtgaggtgagacaa
gctctacagcatggttagggagacctgtgtggtggccatttgaccttctaatgaagaact
gggctctgggaagccaaggcacatgaccttcctgtcaagattgtcttggcagcccaggag
ctgatgagaagccttgggcgtcagccttctcctcagacaccaaggcttcacccccaaggc
ctctctatggcttccttaaaagtaactaggctccacacctaactcctcaggcctttctgc
atcgcctttctttctacctcactttctcttgtagacaatgagagggctgaggcacagagg
cactgatgtccctgtcagcagtagcgtcaaaaatgggtgttgggatctgggagatggctc
tgtgggtgaagtgcttgctgcattagcatgaggatctgagttttctcagctcccgtgtga
aagacaggccaaacacggtgcacacctgtaatccccatgctgggcaggaggaagcaggag
aagcccggagccagccagctccagattcagggagagaccctgtctcaaataacagtgtga
agaacgatagaatacactcactgaccccaggcctctacacacatgtacccatgtgtgtac
atgcacattccacatccatagtcacacatgaacacatgcacacataacaccacacacaca
cacacacacacacacacaatttaagagcacattttaagggtagccaaaacccccatgatt
gaggcagagatatgaaaacagaatctggggttagtaaacaacgcttatgaaatggaaccc
tcaaataattattcttccagtctcaatcaagaaacccaaataatctagcttctcagttcg
ctccagcagtttctttccctggacccctgctgctgatcagttcgggtagcagctaatgga
gtctGGCATGCCAAAACCATTCGT
Primer
(+)GAATTCGGCAGAATGGTCGC
(+)ACGAATGGTTTTGGCATGCC


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