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Human element [ hs2095 ]


Position: chr11:16,896,945-16,901,786 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: PLEKHA7(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GAACCAGAGTAATGGCTTCTGAatactgaagtcttaaaaatttctttcctttttttttct
tttgtttgagacaaggtctcactttgtcacccaggctggagtgcagtggaacgatctcag
ctcacagtagcttcgacctcctgggttcaagcaacattcctgcctcagtcctccaactag
ctgggacttacaggtgcacaccaccatgcccggctaattttttttttagtagagatgggg
tttcaccatgttgcccagactggtctccatctcctgagctcaagcaatctacccccttgg
gcccccaaagtgctaagattacaggtgtgagccaccgtgctcggcctaaatttcatcatt
tttgatcaaacacattcagcttgctaatggcagagcttctggttcagcactctgagcaaa
gggatgccagtgaggtccctgggcgattccattcaatattcacaaatacctaaaagggca
ggttaggtatcaccacaccaggctccaaatgaagaaagtaaggtccctaaagaacggtga
tttacctataacctcagtcagctcctgtgttccccgcacaccaccacccttttgatctct
ttccactactccaggctcatccttgccaaacaaaggctgcctattaaacgctggctcccc
aaacccatttggagattgcaaagtcctctggctttactcgctgtccctggctcccccgcc
acaaaagccctcagtcagctccatttcctgattctaacacccatgaagagtctcatgtcc
tatcactgtgtctcaagaagtatttagcaggcacagacacatcccctgaaatacctgttc
ttagacctgaattgctaccttgctctatggtagtatagagatggcccggctgagagccaa
gtggctggtttcaggggagaacaaaaactctctctgttccacacaagggcttctgtttct
cttcaggctactgagaaagtaatttggcaaatgaggtaaacacaagctagcctccatttt
caaatcccgctcttcctcccagaagcagccccttgaagttgaatggcagccagtctcact
taggaaaggaccagggaacatggacagaagatggcagggaaggatgattcccgtgaaagc
aggctgtgggtaaccatccacataaataagcatgtcttcacaagccctgggccaggaagt
acttgggttaagccctaaagaagtctgacagcaaatacaaaagacttgataagagaataa
agtgaggaccatagagaactggagactgatttaagttcaatgtaagacagtcaacctaca
atgacagacaaggctagtcaaaatgtaaatgcatcctatggtttcttgcagcatttttcc
atattaattttctattcgtatgtattttgattgtaatatgagcagtgactcctgttggtt
aaacataaaggttccaattacttggcacagcaattttttttggcatggcaagaagttctg
gcattatgtgagtgatgcttaacagaacagtgggggtcggagcaccctgataaatctggt
tttctgacagtagtggtgttggtatgctgagagtgtgacaaatctgctccgtcagcacta
gctcttatctggctataaagaggagaagaaacagcttaaaatgtaagaaaagtatctggc
ctaaaagtctgaggagggactctattaaagatcttctcattggtatgctcagcagtatct
gcccctctggaccttctggttcctcaatgtggctcccagaacactgtaaaagcgttaccc
tgcaggcctgcagccacattcagcactgcccccaggcttgtaaagccacttactatcttt
gttctaaataccagtgtctggagaaaaccaaggattctggataacctaataatgttccta
gttaggtctcaaaactggaaattgaaactctgagaatacaagaaattgcctcttcttcac
cttcagctccaatttgggccccacaataaagaggtagcaatcaagatttgaaacagcatc
tctatgtttcctcaattgttttttaagctccttgtgactaattttacttaacattttcac
aaaattgctcacttaatgcaaagcatcatcattaatgtggcatttctaaggggattgaga
atctactgaaatggtctttcaagcttgcactattttgacaatatcaagatttgcaacagc
tcactgcacataggcattcctgtgacaggcccttcttccagaatcaggccttgatgagcc
aatcctctctttaagtagaagatatcaacataacactaatcagcttccttcaacatctgc
cctaagcaacaagtcagcccagagccctagggtcagaagatctgggttcaaaccagataa
gccacctcacctctctgaggctccattcttccatttgcaaataggggataaaaatgtccc
tccaaaaggttgttgtgatgataaaatgaaggaacatacatgaaagaaccttgccaaatg
tctggcatacagaaggtactcaattaatgtttgttgaacctaactgtaccttgactatag
caatgactaacaggcatctacattttaacagggcaagaatagaatgagcctcccttcccc
gcaaactcaatactcctccaggcttccctatttccattaacatcactatgaccttggaat
catcctttactcctttctttaacctccatgtacaatatgtgaggcacacagaaccaagtc
ctattgcctctatctacgaaatatacgttgaattcatccacactcctctccatctgtaca
gctagcaccctactcatctcttaactagatactgcaacagcctcctaccggctctttctg
cttctaccttggcctctgttgcacccattctcctcactggatgcctcctggatcttttaa
aatataagctagaccatgtcaccctcctccattaaactctacgatagctctactttacac
acagagtaaaaaataagctccttaccttagcttacaaaatgctaagatgccttgactcct
gcctggttccatcttcgtctagtaccattcttccccttgtccatgctggcccagccacac
tggcctttttgttccttgaacaccaagctctttcctacttaacagtcttagtactagctg
tccttgcagcctggatgctctttcctccggatatttgagatggagtctcactctttcacc
caggctggagtgcagtggcacaatcgcagctcactgcaacttccgcctcccaggttcaag
gcgattctccctcttccacttcacaaagagctgggattacaggcatgcaccaccacgccc
agctaattttgcctctaaatgaactagctagccctacagaaatctggactcaagtaacag
agacaagaacctaatggtcatcagccatcagaaggcagttggcttctattcttactgcca
gtgcaaggatgagacaccaacatgccaagaacacttcatccttggctctcctgaactgtg
ttacaatataatttggagaaattagccctcccctacaacttcctcaactcccctgtaaag
gagggttaatacaccccactgagaaaatcaaagaaaggaatgcaaacacctgataggaaa
ttactgcgtgattaaaaacacacagaaggataatataaacatcacctgtatctcctttgc
gtgaactgggagagtgttttggcatgaaacctacaatttggtgactgattatatcctcgc
tagtattgctctctgcttatttcatgtgtgtttgttctcctccctgtcccctcccttcaa
gtaagatccaagggttgggaggagtcattccttactccttacttatctcctacagcaaag
aagaatattcatggagtaggcacttgaacccctttacttcaaaacagcctgagcacagac
acatcaccttcagggagaggctgtgcagaaccgatgtcattttctgatttcagcagcacc
atgcatcacagagccctcaaagatacggggaggcagaaggccacaggctctgaagactcc
accagccctggagagcatagagcagggcaactctagaccttccccattcccataccgtcc
acatctggcacacactccataccaatgtgggcagcgacatggaaaccctgtccaactcca
gaccccccacctgaggggcagttagtaaccgtgttcagtgtccaaatgtgccaaagggaa
cagagcctggcacaggcagagctgggcatgagggagtcacaaaattaactgagcaaactt
aaagccctcacaacttgcaaagagggaagtccgtcttttccaagctctagatttaacagt
cttctggcatgatttgcaaacctctacatttcattaggttctcttaagttctccagagtt
ctgcagatccactcaatggccaattcattttgcaaagtactcttctgactgagtcaccaa
caccgcaagactgtctggcccctgagttcccacatggagccccatgacttggggttgcta
cttggtgaatagaaagttttaattttgatttcacaggatcccagcagccatgagaacatt
aaagccaagattctgatagaatgagcaaatcaaactcagagagccctttcctaattttct
tttttaaggaagttggcagaggggcaatgtgacaggagctgagtaccagctttgtcacta
ccagctagctctacagcccaggcaactactcaacctccctgggcctcagtttcctcatct
gtaaaatggggggtgcaggtaGGTTCTCCATCTAGAAAGGCC
Primer
(+)GAACCAGAGTAATGGCTTCTGA
(+)GGCCTTTCTAGATGGAGAACC


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