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Mouse element [ mm2094 ]


Position: chr9:63,636,238-63,640,920 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3 - Smad6

Timepoints:

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGAGGGGGAGAGGAGAATGTgaaggcatgcacaaaaccagcaagtgcgaaggtcctggca
gccggagtttgaagagtgagggagaacaccagagggtaagagcagagagatgaaggggac
gcatcacgcaagcctgcacttcagggcaaggggtttggatctgaccaagtgtggggaggg
aagttgctagagggttcaggatagaagacagacatgatgtggcttagaccctggtggcag
ggtgaagagtggagggggtcaggaggccagtgaagaggtaaccccactgatgcagggagg
taataatgaagatgcagccatcaccacagggcagaagctggttgtatctgtgactgggac
acgagtgctacacagaagccaagagtgaggctgactgttttctactgaacggcttgaaga
gtgaccttgccactgagtgggacaacaggaggccaggttagggtttctgctcagacaagc
tctgtccggatgccttctggacacccaagtaggcacacttagcaggcatctgggcagaga
ggtttgggacggaggtctgagtagagagagtgctgaatacaagagtctgagcctgctggg
cggtggtggcacacacctttaatcccagaactcgggaggcagaggcaggcggatttctga
gttcgaggccagcctagtctacagagtatcaggacagctagggctacacagagaaaccct
gtctcaaaacaaaacaaaacaaaacaaaacaaaaaaccaaaaaaccaaaaaagagtctga
gcctacaaaatggctgggaccttagatgcctgtcagcaagcttgccctctgacctttacc
ctgaactccgacctttcttctcaaccagcacctttggttctgtagaacattccagcagac
atgtctgacccatggttggtggtccacatgccacccagaatagctatatgtggcccaaca
caaacttgtaaacatacttaaaacatgatttatgtttttggtaactacactttgtgggtt
ttcataaatgggctttgtagatgacagtgtcgtgcctctcctggaaaggccggctgagtc
tgctgagaaccagagggccagacaccaagctggaattttcattgcttcctctggagaggc
tttttttctttcttccgatatgagagctggaaaggctccaggtggccatctggcctccca
cttgagcatttgcacgggaggaaactgagtcccaagagagggattgacttgtttgaggtc
acagtcgggatttggtggcgaatgcataggcagagacagctgcctctttgaaatgaggca
gagatagaccctgcagatgctgacctcggcccagtaatgccctgtctaccacctcaccat
gaccacagcagtgtccccagaaagacaggcaagtgcttgcctctgtccccagtgacacct
cctatgacctccaagggaccatgtatacaaattacagacatggagttggagacatctgga
ccctccccgtccacagatttttcaaacagtctctggtccccagctaaacccctctcctgc
gatggttacttgacaggatcttgtgggaagacccaccctaactgtgacctgtaccatccc
tatgggctgatatcctgtactgaacacaaaggagaaggcaagccaggcaccagcaccctt
ctttctctgcttcctcactgtggatgtgatgtggccagatggagcatggtactgctgtcg
ccatgactccccaacacggtggacggtgcctttgaaccatgaaccagattaaacccttcc
cctcttaggttgcgttggtcagtaatgctgtcacaacatggagaaaagttactcatagct
ctcacctccctttattgagaaggtttgtctcacctttcatgcccagcttagatgctccac
ccaccagctatctctcttaacatcccatggatgtgtggcctgatgcctgtgctttctcta
atcagtctgcctctccagggtgtggtttaattaatggccacatgctggggagctgcaatc
taagcccagatgctggtgctgaggctgaggccaatggggatgctgctcccaccagcccat
acccagggagggtatggattcagccttcggcggctctgccagggtttagctgtttggttc
atgcatccttgcccataagacaacgtagtaaccacatcactcttggcattgaagtgaaag
ttatttgggccccaacctgagccacagtaggactcaaacaaatagaaggagttgtaggtt
gtgttgtttgtttgcttgagatagggtctcatagaggccaggctggccttaaactttctc
tttagctgatgaactttgaactcttggtcttccctcacccaccttctgggattataccta
taccatgtcccgtgtgagtagtgttgagatccaacccagggcttgcttcttgcatactaa
gaaagcactctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcgagacagggt
ttctctgcgtagccctggctgtcctgaaactcactctgtagaccaggctagccttgaact
cagaagtctgcctgcctctgcctcccaagtacccagttaagcaagcactcttaacaactt
agctctatccatccccaaccaggctggctttgagttagaacttcaaatcctgctgcttca
gcctcttgatgcttagattacagatatggactactacaccagaaatgatttttcatcctg
gctcatatctaagatgaatttatcttgagggttcttatacagagagccctgttcacccta
gaagaaaagacggagcttccctgatactgtgagggaaacagtggctgtaagcttagctcg
gctgctgtggctaagccttatacctcctggagagaagccaagagtagcagaagggtgata
gaagagtcaggcctggaggctagaccgagccccttggctccagccgcctgacctgtgctg
gacatcacttgccagcatctgggaaggcaggcactcccaccctccctccttccctctctc
cctccctttttcctacttgccctctgcctctgagttcaggtcactctccctgactggcgt
tctgcctgggccatttcctgtttcctgaagatttctcttcagcatgttcacgctgtttct
cagatcatcccctaccctgtccagaatcttcctggaaaacgcctacataaccttcaaaac
tcacctcaaggacaacagtgtctctgtcaggcagggtagaaagacggggaagtttggggg
gtgacaaagacagagctccttcccttagagttcagttaagcctctcaccagcaaaggagc
aagaatttcttctgagtgacaattgtttacagcttttctcccttgccagccataaacctg
tcattttctaggaatctcaacagaaaagccatttaacagggaaaggacgaaagcccttgt
ataactccagtggctcctggtctcaccttatctgacatgatttcatccctggcatctcca
gagccaccctctgatctcatttatcataagagaaagaaaaggaggaggagaaatgggttt
cttagcaacccttggagagctactaacatgacatatacagctaatgctaacaattaactg
tgactctcacttgattgcaatgtcttactctctcctgctgtgtctctggatgctcatacc
ctgacctggagacctggacatccctgtctttcctctgagtgcctctttctcttaaccttc
atgcttaagcctatattaaaatatattgaatgaggccaggctgtggtggtacacaacttt
aatcccagtattctggaggcagagacaggtggatctcttgtgagtttgaggccagcctgg
tctacagagtgagtttcaggacaaccaaaacctgtccaaaaaaaactattaaactattct
ctcctattttctctctctttctctctctctctctctctctctctctctctctctctctct
ctctctctctctctctctctctttctctctctccaatgtcacttcatcatagacaatcct
gaaactcctttggtttggcccaagtcacagtttctagaagtctagaagactccttaggct
gttgaggatggcacagtggagctgtgtctctgagcccctctgctgataccctgacttccc
agatcccctctgtaccttcttctcttctatgtgacagtagtgaccacaagaagagcggta
gtggtgatggtggcttatactagtgggccactcctccaggcactacttgaggctcgtcca
tcatttcaacgaatcttgataagaacctctgaagaagagacattcttgctttataaacaa
ggaaaccaagccataggtgagtgcagagtgtgcttgatctcccaggggaggcaataaacg
tgttggggtttgcccggggggactgtcctcagatccatgtctgcagccactctgttttgt
ttgtccttgcagccccagaagctggccccagtggcacggaagagacagtggttgccaatc
aacccatatcagcgttcatctcagacacctctccctcacccgccctggtcagctcctttc
accgagctgcccatggctttgaggattgcccccagatgctgcaAGCACCACCACGATGTG
AAT
Primer
(+)GGAGGGGGAGAGGAGAATGT
(+)ATTCACATCGTGGTGGTGCT


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