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Mouse element [ mm2092 ]


Position: chr9:63,591,583-63,596,273 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTTGAGCCCTACCTCCTCCTccacttggttccatccattcagcagcagagccctaactcg
gccagccctgccctagctctcacctcaccacatcaggttagggtcagggcttgttttaat
acccagttgccaactcacctcaggacctcaggccggtcccttccccgggcttgggaggga
ttgcgtcacacagtcactctgagcaacagtatgggaacgggctggtacgattctcccagt
tactgtggtcagatatcacagtcactgtgcagagatgagtgactcaggatgaccgctcac
tcagatctgaccactatctggctgtaattaataatggcataaccacatcgtgctcttagg
aatacccagcgtcgggcctgcagcgatgtctcaactgttaagagcaccggctgctcttac
agagggccaaggttcagttcccagcactcacactgggggctcacaaccatctataactca
gttccaggggatctgataccatcttctcagctacaggtcctaggcatgcatgggatatgc
aggcgctcacagaggcaaaacacctatacacataaaataactttttaaaatctttttaaa
aaatgaaagaaatatccagaatggtttaaggtatcacatacaaagccaccttgattctaa
aaagaagcataaccccattttctgcccatcccttttcttgagacaaacaagaacttttaa
ggaatcggatctgaattttctcatgaaatgagaacaatgctaatctcatggctttgtcta
tcagatgcatacgatgttcctcttggtgatctgtggggcagagcacagacagaagcagag
atcccgcttgggtctgaaatgtcccataggctgcctgcatctggacacctgctcctctct
ttagttgaaggtgcggtttggggagctataggcctggctggtagagatagagcactacag
ggtaggcctttgaggactacagcctgcccctgcttctgcctagaccatgctccctgatct
atcaaggtgtcagcaatccaagctgcaagctcttaccaccacagaccagacccacgccac
cacatctgctccatcatggcagaccacaccctctgattaaactgtgcgccagaataaacc
tgtcttccctaatgctgcttctgtcttggcaataagaaaatgacaggcactaggggcaag
cctcaggcacccgaactccaaatcctgccaccggaccctctgggcctcagccatccccat
gtgaacaccatgactcactcacctatccagagtgctgcaaacaatcaactgtagccggca
cgcatccgtacaccacacaagagaatcacctcaggggagactcaggatgtgccagaggcc
tgcactgccaacccaaccatctctgacagcaacaagatggatggctcagctgctctctaa
gacaaaggcataggagcacaccagccctgagtgtagactcgtatcagtgtgttcgttgct
catggttctccagggtccccatgagaatccgggtgtgaacttggaaacctgaagaactgt
gcattataaaatcatggcgggcgacacagccaccgtgttgcttcctgcaaacagccccac
acagagtatttgagtttcttccataagcctgcagcagaggctctgtccctttctactcat
ggggacagagaggcactgtacggtctcatctggaattctagcaatgttatacattcaaaa
aaaaaaaaaaaaaaagtccatagacacaaaagcttatctaaagaagaaaaataaaaagaa
catatctatcaacttagattagcaagaaaaacaagggactctccacagatgaaacaaatt
acagatacctgtccagacaggagatgggagttctgtttgtttaaactctagtatttcact
ctcttgtttttatttactttgtatgtacatgtgtagaaataggtgtagtggtcagaggac
aatttgaaggagttggttctctccctccaccatgaagggttcagggacggacctcaggtt
atgtgtgagtcttggcagcagacatccctaccagctcaaacatcctaccaccatccccct
ttgttttttagccagggccttactatgtaatcgaggttggcctggagctcacaatctcct
gcctggatctcccgagtgctgggactgtagaagtgcaccaccaggcccgccttatctgac
tcattaagagacagagcctgtttctgataaaccgataacattctccaagtctactgtgga
gtgcagctatgctggctggctgcagtgtgctctggaatcagaaacctggcctggataatg
tgatacactgtctagaggcagtcagtataaaaactccgtgacgggctggcctagggagac
ccagaggggttaggatcctgtctatggcctctgtttagggagaccgatcatccacagagc
tcagagacattccccctcatttcccaaggaacgcatgacgtgagtcacggctgattaccc
gaatgctcgctccggagcctcctggctgaacaaggcgtctttgctactgacgggcaaaac
actatttcaacctgctccagacatagcctagagctgtccacatggcagtataaggattac
gtctctgacctggataactcgggcagtaaacctgctgttactggccttgaggcctcagtg
ggagagcagtgagcagtggctttagacaccacccctccactttaaaatctcctggacatt
tacagagcaaggtccagacaccaagcttggctgacccaactgcttggcaccatccctccc
aactcctctggccgctcccatttcctcgctgtagccaccctgagctgccctgcctctccc
agacactagccctctccacgctgtctggcctgctctctccatagcctcctaccccactcc
cagactcttttgtaagcatgaagacccagctagagcatttcctcttctgtgaaaccttct
gatgttcagaggatggctgctctccctctgggctcctaaacaacactctgtgaccttaac
caggccatttctctcaaggacacctctgtggttgaacgggcgcttcagtccctttatgcc
tctggacagttcacagacaggacttcatctctgtgtttcgtgaggcccaacacaaagttg
gtttgccaaaacccaatgcacacttaggggccaggatccccatctaccactcaagctgga
atggggaaccagcaacatttagcccacctcagcctcggtttcaggtaagggaaatcaatt
cctagagatttctccacaatccagtccctggcacaatgggatgggagtagccagggccat
tttgctgagcacatggtactctaacaggcctgctgctaatgcgggtgggtggtagcatgt
gtgtgcacaggcaagcctgcgtgctacacagcacactccagaagacagcaaaagaataaa
ttagactagaataggtcctggtgtcccaccttgggaaatgccttaacacaagccagaagc
ccaggtatgaatttaaaaattctctgacaccttggttcacaatgtggagacccaggtgag
ccagccccggggtccatctctgaacaccctacactttaggagccgtatacacaccatggt
tatgtcccatgctacatttcacattctagacaattatttgcctaatccacttgcaccttt
cgtcctgtttgtacccgtaagtacacctgttgcctgcagtagagtctgaccttagatgtt
ggaccaggaagaggtaagacacaggcctgacacagccctgtcccttgaccctgtctgtat
atgctctgtcccatgaagaagagtccagcaagtcgaagagctgaacccggttctccaagc
atgatccccttttccatggctccatatgcagccagaggctccagggcccacatccaggtc
actttggagccctcagcttctggcaacagccagaccagctgctgaggtgaaacttcagga
ggacaacattccaaccctgccccaagaaaacaccagcaacaataaacagcacacacttac
aggcagctatcagtcacaaactgtgagtcacagggctctgcatggggatctcacccatcc
ccccacccagggcactgattcatcaaagtttgttttcaatgctattatttttagtcagcc
aagcaatgttttaaatggccatagagaagcggagaaggggaatggagcggacggcccctg
aagaacatcgattatttttttaatactccaccgggacctcagccaatacgcagcatgact
gggcacttttggggtacaggcattgggaaaggatccttcccttacatgaactgccattct
tacagatagtgagctctgagaccagggatctccagggtgccctgctggtgccatcaccaa
atgtccttcttgagaatgaaaaggcgaatttactgaacacatactatgagctacacactt
gggctaggaacctggcctgtctcagctcactcttacgtgcgatcaacagtcctgctccca
tttttcacacaggagaactgaagcaaaagatatgaccaaggccattaggctccatgcagt
ccttctctctgctgcgttataatgtcccagcttcctctcccacttcacaagTGGCATATG
GCACACCCATT
Primer
(+)CTTGAGCCCTACCTCCTCCT
(+)AATGGGTGTGCCATATGCCA


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