Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Human element [ hs2092 ]


Position: chr4:10,317,169-10,322,086 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: MIR3138 - ZNF518B

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AACATGGCAGGGTCTTTTTGgtgaatgaatgggtgtgtgcagacctatctctgggttcct
acctgtattcgaaaggatgcatgatcctgcgtggctggcaccatccatcagggacaatag
gctttcaggggtaggcactgctgagggacaatgcttgaaaatggacatgacctttccttc
acagctcttggctcatggttgtgatactgggccctgcctgcatctctgagaaaaaagttt
ctccagcttgatcctgtacgatggggccttttggcgccatatttggttaggtttttaggt
ctattctcagttcccttttcaggcctttttcaattgatgattctcagagtcggagagatg
gtttggacagcttatcaggatctgagcaaatagcatgagtgaggctgcttctgtgtctta
cccagagatttgcttctaatcccaacgttccagtggaatgtggtctctcccataacagtt
gaaattctttgaccacttttcgttggaaatttttgaacaatgtgcatttctttgaattga
agttctttagtataaaaggggagacggtgatggcctggggtgctttttcttatacattta
aggggtacagtgcaattttgttactggtatagtgataacctgtgcttctagggtatccat
ctccctagtaatgtgcatagtatccattagtttttcatgatccactcccattaccccttg
acccatcacccatgacccttctgagtctccaatgtctgtaattgcacaccctatgtccat
atgtacacattatgtagctcccatttacaagcgagaacaggtatttgacttgctgtttct
cagttgtttcacttaagataatggcctcctagagtgctcttgctgggaggttttaatttt
gtattcatttggttccctgggccacctgtatatcttacacctacttcctgcgatttcaga
caatcttgataagaacattgaaaaaatggattaattgaatggagttcataatatgcactt
cccctagagactgtaaaacaagtcccacctttattcttgatagaaataattgggcatttt
caaatggatgaatcatgccagtagaagaatagttaagattcttatctgaagtgagaccca
agtatctgcatatggatatcctaaattcagatactgagacctatgtttgaggtagaaagg
cttgtgaaagtgactccaggaaacatggaggagtaatgaagacagggtaggaagagcagc
cagaactgggagagcattgaagaggtcacctctatgctgtgtgcaactcagtctccctgg
gaatcctctaaaaacccacatggaaaatgatgtcccagaatctcattcctaggattgcct
accacatccaacctacatctttaagggtagtattctttttgtactgcagacgtgtacctt
ggtgcttgaggctgatgtgccttgggtgattttagagagccagtacagtgagaattttga
tagactcagcagttctacctgaagcatgatatatattttggcaactaaactatcctgctt
caataacgagtggtaacccacgttgggatcttattagggccaggtgaggcttggggctaa
gagccagcctgatggcacctcctcagggtcctgctgagtgttgcccagcatccagtgagc
agctctacactggcaggtgcttctgaggtttcatcctgaatgttctcattcttccaggct
gcttcatctatgcaggataattccacagcgtggggccaggaatctagcaccgatccagag
actgagtccactgtaaggataactcactgcaagctgccggtgctgtgaggcctgtaccta
accccagcctctaaccttcagcttcatttgggctggaagtggccatttgtggtgagagct
gaaaacaacacccttcctttatgactggacgaggagcagctgccttgtcagtgtcactag
ggctggtccactgcttatctaaggttaaggagaactaaaaatgggatgtcctgcacatct
ggacctcatggactctagaggaaagccagacactcctttcatgcctggagactgttgtga
cttcagtgttacttatttgacccatgctcacatggagtggctatctgattctgtttcttc
cccacagactgttgagcagaacacattttcctgagtgatttttcaccttgaaaggaacaa
gtagttccatccagtgatttaaacctgctctggcagtttctcagaaaggtcaatgataga
tgcgacagcttaaactcacccagaggtggtgaaggactgagcgcagaatgcgtggtgctg
gaaacctttgcttttcttacggcttgtgcaaaccattgaaacgtgctgttccgcaaattc
tgggtgcagtgctgattgcggtcatgtcagcagctttgctgcacaagaaaggctcagtag
tcttgaatccaagaatcctgtttctgactccatgcccatcaccagggtgtgaaagtgctt
ggctgtctggttcctggggcccaagagtgaaccaaagggctctcttgatgtggaagcagc
tgctggtcttgctttccaggtcttagctattttcaggttctgggtaagtgtttcacagag
cctggaaggtggctgccacaggggagggtggaggaagcttggagcagtgtgtcaggacaa
ctatcctgtgtgctgggtgaggaatgttctgcctcatgggagctatgctgactttacaga
tcatggacagcagggacctcgtggcccactctgaaaggggattctctctaggatggagaa
tttaagcacccagttatctaagtccacctagttaggaaagaatgccgtttttaagatgtc
tgacttggatttgaaacaatctgcatattatatatttctaccttagctggtggtagaatc
tagtgtggaaatggcctgggcctagagcaaacttggaaattttgatttagcttccgtcgt
tgaaaatctgttctcttttgtttgaatctgtatcttttaaggcatttctgtttgacacat
ttgacaaataaatggctactctaaatttttccaatatctctaccctggaatgctaagatt
cattacaattttctttgcctgcctttcttgatccagggttgccagagaaacagatctgag
ggctcctatataaaatacaaggaaaaacaaagacgattctggatttccatgaatgttgaa
actaaatttgacaggtgctatattttgtatggtgttgcaaatgacttaggagctcaaatc
aactttcttacagttttagaaatcagaagtttgaaataggtttcatttagagaaaacaaa
gttgttagcaaggttgtatttctttctggctgcttcagagatcactttcctcactttaga
ccccatataaaacatgacttgtggcttcttagttaatcctcagtcaggaccttcattggt
gttgagtcagcaccatgctctgatttttttcttctgactcttgcctccaattctcagtct
tcctctttatcatgttaagctaagattaccctgggtttggccagggggcccactgtcagc
aaggtgattaaagtcagctgactacaacccaatgccttgggtcctaattcacccttgctg
tgtagcatgtattcacaggttccaaggatggggacatgggtattagaggactgtctctgg
ccgctttccttggtacttcacctggaagtgatgccgtgaacaccagaggacaatggtgaa
tccgtgagtgggtggcaatagcagcttctagtgggataggattgagctggtcacttagcg
gtgaccaaggctcaatcctgatgggggggaacctgcaggagccatgaatactgcatgcag
aatatctgtcttggggctaagagtctgttacccaccaactctgttgaagcttccccttga
cctagggtaacactttcccctgagctactgagctatgactctccatgaaaaccatggacc
cagagggtgagggtgtggcctggagcagcccagtcattcaagtagaatgggatacaacct
gggtctccccgttttttaaatatctcaggatgcagaaagtgagaaaggttaacttgttcg
atgaatgacttgtctttaaatctcatactttctccccccacagaaaataggtgagattat
ataaatagagctaaaccttcatctacctcctgttgtgtgtcatgttgccaatgtgacaac
tgctgtagaaatgtgcaaaactcattgggggtataatgcaggttatcggttagactgcca
catggagcatattgtatgtcacctattgcttttcattgccacataccataccttgtttga
gaacaaatacgatctaaactgttacattttcttaagatgtgcttttgtcctgtatttgag
cttctaagaacagttggcatcccatttgaattagagcaactacagctctagttgtgaaga
atttttctcctcatccaacatcgtagatttttctgctccctcagattgtgaccccagcca
aacagaactctgacttccaagtaaaatttgggggactgagaaggaagaatgaactgatgt
gcaccccttctcttgcctgcagttcttggcaggcctaagccacgtccctgaatttcccat
actcgatgctgtctgcccttggaagctgctggctaatgtttggttttaactgtgctaccc
tctgcaggtggctttttacttcaattacctcagcctctccacgcagcctaggttgtcctt
tgacccttgtatgactgacactgctgttctgtctgtgcacaatgatggtcattgtcaaat
gagtatttggaatgttcctggtcaggttgctcacCACTGATCACCTCTGCTGGAGaTt
Primer
(+)aacatggcagggtctttttg
(+) cacctccagcagaggtgatcagtg


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.