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Mouse element [ mm2091 ]


Position: chr9:63,551,621-63,556,371 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: Smad3(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCCTGTTCCCAAACCTCACAaatgaggctccaaatcattaggaagtatgttctaaaataa
taaaaatataataaatatgtaaaccggtagaacactattattctctgggtaggattgtat
gtgctctgtttttattctacaggcatgagactcaggtgtttccacatctatatcacctga
catgtgtgtgtgtgctcgagagtgtgctatgacagccataacataaccaatgatgggact
tcttttcagctccattataatctttgaggacagctgttatgcatacagcttctccttagc
caaacatcatgatgtagcacacgagggtaaattcacagtacctgtgctttgcagtggtcg
actcctggtttgacttgtccctcagcttcttgctagtcagtgggagccagccatctcaat
ttccagacttccaagatgaagtttctggctctttaaggccaggcttgggttcccaccttt
gtcaaagtcagggtcatctggctaccagccttcccggctgcccttggacgtctgcccagc
tcttcagatgccttcacttgggcatacagtagtgaggggttcaaggccacatgaaagctg
aaatcatatgcagaacttcacactttctatttcagcagacacaggcaaggctctcaatct
atgggacctgcttgctgaccggcatagcctatccagggggtgtgactgggtataaaggta
tcttacactcccaaggacagagaagtccctttcttttctggaaatattcccaaaatgtac
catctaatctcttctcaaagatttcattttctctgaaggtactagattcttagattctct
ctccctttcctctctctctcctctctctgtccccgtctctcctctctcccctctcttcct
ctcgccccctagtcattgtgtgtgtgcatacacacacatgtatataccacacatgtggtt
cctactggtgcatgtgtgtatacatgagtacatgtatacatgagtacgtgtatgcacatg
tacacatgagtatggtgggaggccagaggtcaactccaagtgttgttactcagaagcgac
ccaccttcttttttaaacagtttctggggctggagagatggctccacagttatgagcaat
ggtgtttttccagagaacccaggttcaattctcagtagctacttatgacactccacagtc
tatatctattccaggatgttccctttaggtattgtgggcaacagacgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgttttagaaaggctattagctgttggaggccttccctcagtggc
agctgggtggctgacagctttttgtgtcatttcattcactaatgttctcagcatagataa
gagcctttggccggcctcattgtggagactgaactcaagcccttatcctgggccttcacc
aatgaagcaatctcccagcctagggaaatagattgtctgcccatctgtttgtctgtttca
gagacgatcaatcctctgttccttgggctcaggataaagtgaatgttttccctgcagaga
tcaacaagtcttgaggcacctggcaccctggcactcactgatcctggcttcattcattca
taggacacggcctttaaacaaaaaaggtgagagcctaaccagcacttcagctgtacctgc
agtacacctaaaagctgggacaggggagcacacattcctctttcccaggcttgctggaca
ccagaggacattcctatcatacctgttctcacgagtggtgggacctgctaagagtctgtc
cactctagcagtccaagagtcaccgcagaaacatacttagccccattctttagggacctt
caatgtaagtccaacctaatcaccccaactttgggattcaggggctaagcacctgctgtg
caccagatgtggtgccaggacaggactgctggaatgggggaggggtgacggcagcactgt
cacacagttgccctgtgatgggccttacaatatgccaggagtgggggctgatctctgaaa
cacatgatttggtcctcaaaaccaattcatgggatttgtcacctgattcaggaatgaaaa
aaaaaaaaaaagatttgtagaatgccaatgtcacagctggcagtcttatggcttcctctt
cacagggcagggtctggacagagagctacccaacccccaaagccctgttccctccccaaa
actatcctgacagatcctggcttaaaatcgaagctaggagctactctctccatccactta
cttctctggggcttagtatttttcatcccagaacagcagatatttaaggagacttcctct
ggtttagtcatagatgttttagggagacctaaggaaatcagacgtctttctggtgacctt
agaagctgaatggacaagggcctgctgtcctgcctccttcgtgaatgctctcatcagcat
aagagagcctgagtatagctgcccctgactgagcagagctgcccctgttccagctctccc
tccccacatactctccctcctgcccctctacagcccttcacagtttccaggagctgccca
tccagggcaaggcagggacaaaagagagcaggggactaaagtgtcctcagagatgatagg
caggctggtgactggggccggaagtgccaagggcccttgctggcagccagcctgcatcac
aggctgacaggaaacaggagaagacagcactgaggccgcgtggaaatccccaccgggctc
cacgccggggttgtgactcagagtcctaggcagccggagagctaccctcccaccccagcc
ccccaggcagggtggagaagaggccacaggaaataggtcactgtatctgtgcacaaagat
gcaggggcctggcatccaccaagctacagatgccaagatgtggggcactgacgaagggca
tggattcagggaccctgggtccccctgcaatcctgagacgttcctttctaaagggagagc
ttcagcagccgccgcagagacccacccctcttttaaaacctgctcttcagagactcaagg
agtccgtgaaggatggatcctaccatctacccagaggccagacaactccactccacagag
ctcagccctctcattccccaggatgggctagctggctcttcaggagatcccccaagagac
tgcccaatgcagtcaccatcctaagcagggacctctaccaggtctacccttcagtcacaa
tggccgtgtgttacagaggtcacatcttttgcttccaaaaaggaaacaaacaggattcaa
aaatagaaacacttttttgtttaaaggccgtgtcctatgaatgttatgagactcaatgtc
aaggcaggggcttgagatacaagaaattcatcccttctccgatcccctctgacaccctag
ggagctccaggccctggaaagtgcccagttcctgactgtgacattgacatgatcaatttc
tttgtctttatttttcttcaagatagggtctcactacacagccctagccggcctagaact
cactgtgtacaccaagctagccttaaactcacagagatccatccacctgcctctgcctct
atctctgcctccgaagcgcttagaagagacacatgtaccatcacacctataaaaataaaa
ctaaaagctcaatattggactgacaaggtggctcagtgggtaaggacacttgccctgact
gtcgtcacccagtggcctctaagtaacgacattcttctgggtaccctatgacatcagcac
cattgctctgtctctctggccaacccggaactacttccactctgtcctcctggacctgac
ctcaatcccccaagactcacagtgtctccctcatctttgacctctccaggaactctacat
acatccacccagcaccagtccaagctccaagtgatgggtgctgcacacacctctgctgtg
ccatgcacatcagcaggtattgcacatgcctgcactgagccttgcatatcagtgctggcc
tcagagaacacagtagtgaactagagataggccagagctaacctggcaggagccccggag
gtactgcaacactggcaacagggctgtgacataaagcctggctcatgatggcagcaccca
ggcagtaggatgcttgtgactttaagacgatgtgtgcggtacccacacatgcaaagctga
gagatcaaaatctcagccagatgttgtcttattagtttgctctgagatgggggtcttatg
tacagagatgaagaggccctggaacctggagacctctcacatgtggtcaagctggctcta
cacctggcagccagctgtttcacagctgtataccacaccccacaccagctgcctagtgaa
atgcaacttgtctgaccggaactctgtttggtgctttttgtgattgtatttgatttcttt
ttccacccaaatcttaggtgagcacaccgtgggtaagggcttgagtctgttaatcctaga
tctgcatgtcctcatcatgggcactgctttgttggcaaacaccaaacccagaatggccat
ttctcagccaaaggtacctagagcccttatctgacggcggtagcgtgtactgtggtgaga
aatgactccacatgggctacaccccactgccatgaccacagctgctagtgtacagggtgc
tctccacggtggttatgtagccagcaccagatccttggcaggaaagtgttcAGTACCCCA
CTGAAGCATGC
Primer
(+)CCCTGTTCCCAAACCTCACA
(+)GCATGCTTCAGTGGGGTACT


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