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Mouse element [ mm2090 ]


Position: chr10:51,723,634-51,727,155 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: 4933411G06Rik - Vgll2

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
cTTtCAACTTAAAGGGCCAGTAaatatcttcaaaaaaattgtagacgaaaactcccctaa
catgaagaaagagatgcctgtgaacatacaagaagcctacagaactccaaatagactaga
tcagaaaagaaattcgtccagacacataataatcagaaccaaaaatgcactaaataaaga
cagaatattaaaagcagtaagggaaaaaggtcaagtaacatataaaggcaggcctattag
aataacaccagacttctcaccagagactatgaaagccagaagatcctggacagatgttaa
acagtcgctaagagaacacaagtaccagcccaggctactatacccagcaaacctctcact
tcccatatatggagaaaccaaagtatcccttgataaaaccaaattcatacaattactttc
cacaaatccagctcttcaaaggataataaagggaaaacaccagcacaaggacagaaacta
cacactagaaaaagcaagaaagtaatccttcaataaacataaaagaaaacagctgcaaga
acagaatcccaactttaacaacaaaaataacaggaagcagcaattactttttaaaatttc
ccctaacatgaatggacgcaattcctcaataaaaagacatagactaatagactgactaca
caaacaggacccaacattttattgcttgcaggaaacccacctcagcgaaaaagacagaca
ctacctcagagtgaaaggcttcaaaacaattttccaagcaaatggtctgaagaaaatagc
tgtagtagctattctaatatcgaataaaattgacttccaacccaaagttatcaaaaaaaa
aaaaaaaaacaaggaggggcacttcatactcatcaaaggtaaaatctaacaagatgaaca
atcaattctgaatatctatgctccaaatacaagggtagccacattccttaaagaaacttt
agtaaagctcaaagcacacattgcacctcacaaaataatagtaggagacttcaacacccc
attctcaccaatagacagatcctggaaacagaaactaaacagagacacatggacactaac
agaagttatgaaacaaatgtatttaatagatatctacaggacattttatcctaaaacaaa
aggatataccttcttctcagcaccacatggtacctcctccaaaactgaccatataatcgg
tcacaaaacacgcctcaacagatacaaaaatattgaaattatcccatgcatcctatcaga
tcaccacagactaaggctgatcttcaataacagcataaataacagaaagaaaacattcaa
gtggaaactaaacaacattctactcaatgattcctgggacaatgatgaaataaagaaaga
aataaaagactttttagagtttaatgaaaatgaagccacaccatacccaaacttatggga
cacaatgaaggcagtcctaagaggaaaactcatagccctgagtgcctccaaaaagaaact
agagagagcatacactagcagcctgacagcacacctagaagctctagaactccacccaag
aggagtggatggcaggaaataatcaaactcagggctgaaatcaaccaagtggaaacaaaa
agaattattcaaagaatcaaccaaaccaggcactggttttttgagaaaatcaacaagata
gataaacccttagccagactaactagagggaacagggacagtattctcattaacaaaatc
agaaatgaaaaaggagacacaacaacagagcctgaggaaattcaaaacatcatcagatcc
tactacagaaggctatactcaacaaaactagaaaacctggatgaaatggacaacttccta
gacagataccaggtaccaaagttaaatcaggatcgattaacgatctaaacagtcctatat
cccttaaagaaatagaagcagtcatcaatagtctcccaaacaaaaaaaaaaaaaaaaaaa
aaaaaaaaaagcccaggaccagatgagtttagtgcagagttctatcagaccttcaaaata
tttccaaccctcctcaaactatttcacaaaatagaaacagaaggtactctatccaattca
ttctatgaagccacaattactctgatacctcaaccacacaaagatccaataaagaaagag
aacttcagaccaatttcctttatgaatatcgatgcaaaaatactcaataaaatcctcaaa
aactaaatccaagaacacatcaaaacgatcatgcatcatgaccaagtaggcttcatccca
gggatgcaggaatggtttaatatatgggaatccgtcaatgtaatccactatataaacaaa
ctcaaagacaaaaaccacatgatcatcttgtcagatgctgagaaagcatttgaaaaaatc
caatacccattcatgataaaagtcttggaaagagcaggaatttaaggcccatacttaaac
ataataagagcaatatacagcaaaccagtacccaacatcaaagtaatggagagaaactcg
aagcaataccactaaaatcaggaactagacaaggctgcccactttctccctacctattca
atatagtacttgaagttctagccagagcaattctaaaacaaaaggagatcaagtggatac
aaattggaaaggaagaagttaacatatcactatttgcagatgatatgatagtatatataa
gtgaccctacaaattctaccagagaactcctaaacctgataaacagcttcggtgaagtag
ctggatataaaattaactcaaacaagtcaatggcctttctctacacaaaggataaatgga
ctgagaaagaaattagggaaacaacacccttcacagtaatcacaaataatataaaatacc
ttgggtgactctaactaaggaagtgaaagatctgtatgataagaacttaaagtctctgaa
gaaagaaattgaagaaatctcagaagatggaaagatctcccatgctcatggattggcagg
attaatatagtaaaaatggctattttgccaaaagcaatctacagattcaatgcaatcccc
atccaaattccaactcagttcttcactgagttagaaagggcaatttgcaaattcatctgg
aataataaaaaacctaggatagcaaaacctcttctcaaggataaaagaacctctggtgga
atcactgtgcctgacctcaagctgtgctacagagcaattgtgataaaaactgcacggtac
tggtacaatgacagacaggtagatcaatggaatagaattgaagacccaaaaatgaatcca
cacatctatggtcacttgatctttgacaagggagctaaaaccatccagtggaaaaaggac
agcattttcaacaaatgatgctggcgttatcatgaagaagaatgtgaattggtccatact
tatctccttgtacaaagctcaagtctaagtggatcaaaaacctccacttaaaaccagaga
cacttaaattaatagaggagAAAGTGGGGAAAAGCCTCaAAg
Primer
(+)TTTCCAACTTAAAGGGCCAGTA
(+)GTTAGAGGCTTTTCCCCACTTT


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