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Mouse element [ mm2089 ]


Position: chr13:15,384,707-15,389,855 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAGCTCCACAGAATCAAATAaccctactataaaatgggatacagagctaaacaaagaata
ctcaactgaagaatatcaaaatatgaaattctcaggcaaattgatgaaactagaagatat
catcctgagtgatgtaacccaatcataaaaaaagacacatggtatgcactcactgttaag
ttaatattagcccaaaagcttggaatacccatgatacaattaatagaacacctgaagctc
aagatgaaggaaggtgacagtatgggtgcttcattccttcttagaaagaggaataaaata
caggaccaaatacagagacaaagtgtggagcagagacttaaggaaaggctatccagagac
tgccctacctgatggtccatcccatatacagtcactaaacccagacactattgtggtggt
aagaagtacatgctgacaggagcctgatatagctgtctcctgagaggctttgccagagtc
tgacaaatacagaagcagatgctcacagccaaccattggactgagcatggggtccccaat
ggagaagttaaagggctgaaggagatgaagggtttgcaaccccataggaagaacaacaat
atcaaccaaccagatgccccagagtgcccaaggactaaaccatcaaccaaagaggacatg
tagagggacccatgactctaggcacagatgtagcagaggatggccttgccaagcatcaat
gggagaagagacccttggcccagtgaaaggtggatgccccagtgaaggggaattcaagga
tgggggggtgatagagggtgggtaggtgagggaacaccctcatagaagcaggggaggggg
aatgggatgggggtgtctgggaggactgggaaagggaataacatttgaaatataaataaa
gaaaatattcaatttaaaaaaaaaaagaaagaaagaaaaaagtgggaaagacccttaaac
ttatggacacaggggaaattttcctgaacagaataccaatggcttatgctctaagacaaa
gaattgacaaatgggacctcaaaattgtaaaacttctgtaaggcaaatgacactttcaat
aggacaaaacagcaaccaacagattggggaaagatctttaacaatcctacatccaataga
gggctaatacccaatatatacaaagaactcaagaagttggactccagagaaccaaactac
cctattaaaaaatgggatacagagctaaacaaaggatttccaattgagaaataacaaatg
gccaagaagcacctaaagaaatgttcaacatctttagtcatcagggaaatgcaagtcaaa
atggccttgagattccacttcacaccagtcagaataggtaagatcaaaaactcaggtgac
agcagatgctggtgaggatgtggagaaagaggaacactcctccattgttggtgggattgc
aagcttgtacaatcactctggaaatcagtctgatggttcctcagaaaactgaacatagac
ctcaggacccaacaaactcctagacatatacccaaaagattctctaacatgtaacaagga
catatgttccactatgctcatagcagccttatttataatagccagaagctggaaagaaca
cagatgtccttcaacagagggatagatacagaaaatgtggtaaatttacacaatggtgtg
ctactcagctattaaaataataactccaggaaattcttaggcaaatagatgaaactagta
aatatcatcctgagtgaggtagcctagtcataaaagaacacacatggtatgtactcactg
ataagtggatattaggcaaaaagctctcggcatacccacaataaaactcacagaccgtat
aaagctcaagaaggaggaggaccaaagtgtggaggcttcagtccgtcttcatagggggaa
aaatattcaagggatatagagggtaggaggaacttgggatgaagagaggagaggcatggg
aaaaagggagggcaagatcaggtatgaggagaaatgggggtgatatacagagggtcagga
aattgaacacaggtgtgtaacagtgggggatggggagctgggggtagccaccagaaagtc
tcaggtgccaggaaagcaagagtctcccaggacccaaccagtatgccactagctaaaata
cccaaaaaaggagagaaagaacctgtagagaccatatgcagaggttaggcatggctcctg
gatgagggatgaggccacccattcatctccaaaagtttaaccaagaattgctctaatcta
gaggaaatacagggacgaagattgaagcagatactgaaggaaaggccatacagagatttc
tccacctggggattcattccaaatgcagacacacaatccagacactattgctgatgccaa
gtgcttgctgacaggagcctgagatagctgtgtctcctatgaggctttgccatgcctgac
taatactgatgtggatgcttgaagtcaaatatctgactgagcatggtgaccccaacggag
gagttagggcaagaactaaagaaacgtaagagggttacaaccccatagaaagaacaacga
tatcaaccaaccagacaccaagagctcccagggactgaaccaccaaccaaagaggaccca
tgactccacctgaatatataacaaatgatagccttatctggcatcagtgggagaggaggc
ctttggtcctgtaaaggcttgatgctccagtgtagggtaatgctagcatggtgaggtgga
aatatgtaggtgagtggggcacaccctcacacacagggggagagggtgggagagaaggtt
taccaaggggtaaccaggaaaggggataacagttaaaatgtaaataaataaaaacccaat
gaaaaatcattttaattatgaatattaagacaattctgtggaggattatagaaataatgt
tttagcctgaaaagaaagacattcaaaatttacatggaaggaacaatgccagactaaaca
atcaaagcagatctgaaaaaaaaacataacagaatgtagagtgaagtaaccagtcaatat
ctgatttgagttaaggtccactccatgagatggaacccaactcaatagtgcctgggtacc
caaaaacctatcattgaataggccatggacctagtggaaaactaaaaactactgttccac
taacagcaataaaattgacaacatcatgctatattcataggcatgtgcctagttcagcca
tcatcagagaagcacataggaacaaatacagagatccacagccagataatatgcagagag
tgagagaccatggaacacctagctataaaagagatgtctccatcaaatgctgtggggatt
ctgcacaagaggatgcagaaagaatgtaagagtcagaggagatggggaacaccaatgatt
caaggccttctagagataacaggcctagtgcacatttgaactcattgagactggcacaac
ctgcgcaaagccataatgggtctgtacctgatagggttctagagctgaaaggagaagtag
acagatgccctatccgtaagccagaagctatcttcaattgatagccacatgcaaatgaaa
acttagttttctccaaggaactgtcactggagaaacaaaccatctctttttttggggggg
agggggtattttatttttttacatttcatatgttatccttttttccggcttcccctccag
aaacccccatcccatcttccctccccctgcttctacgagggtgctcctctacccacctac
ccactcccacctccctgccctggcattcccctattgtggggcattgagccttcccaggac
caagggtctctcctcccattaacgttcgacaaagccatcctctgctacatatgtacctga
agccatgggtccctccatgtgtactctttggttcgagccctggaagctcatgtctggttg
gttgatattgttgaaggagaatagttcccatgcccagcaggtggccaacacaaatgtgtt
ccatgaaatcttaggaagtcccttgtatcataatattaagtcatggtggggttttctttt
gttacctttgtctgctagcttttcttatgtgtatagattatgattccagtttgagatttt
tatgggatttctgagtgtgcaaacctgtgtgtttctgcatctgcatgttcttttgggctt
ttcttgggctccttttcttgtttggccatatttgattaattttttaaacttatcttatca
tattttattattattattccttagattcctatttgttttctaagaacagacaaaaaagga
gtttggattcagatgggaggggaggtagaaaggagctggggggaataagaggaggggaac
cataaccatatatattgtatgaaaaaatatatattgtatagcaatacatattgtatgaaa
aaaattatttttaaataacagaaaaaacaaacacacaatagacccatcatcttctgtgaa
attgattcagtaatcaaaaatctcccaactataaaagaccaagaactaatagaattcagc
agaaaatgcaagcagacgttcaaagaagaactaatatcaataatcctcaagttacttcaa
acaaaaatggaaacaaaaggaacatatcaaattattttttacaaagccactattaccaaa
accacaaaaagattcaaccaaaagatgaaaattatatatcaatatcccttatgaacatag
atgtaaagagtcacaataaaatacttggtacctgaattcaagaacacatcaaaaatatta
tccaccatgatcacattggcttcacccagatatgtaaagatggctcaaagttcataaatc
aatagatataattcaaaatataaatataataaaggtcaaaatggcatgatgcaatccaac
tatactttcatgataaaaattctggaaaaactttaaacacaaatgatgcatctcaacata
atgaagacaatttatgtcaagtccacaaccaacatcattttaaaagaggagattctcaaa
gcattttcattaaaattaggaacaagacaaatgtctacttccttcataggttttggattc
ctagcttaaagtctcagctagagctataaGACAGCTGAAGGAGGTCAAG
Primer
(+)AAGCTCCACAGAATCAAATA
(+)CTTGACCTCCTTCAGCTGTC


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