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Mouse element [ mm2088 ]


Position: chr13:15,356,428-15,361,527 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTGGAGTTGTTTTTGTGCATCATGAAAGATACAGACCTAATTTTCCTCATtattcataaa
cattcagtttttgcaggccatgttttgaataaaatgtctttattccagtgtgttttaggt
atctttgccaaatattagatggctgtagttacatgtacccaactatgggtcttctatttt
gttccattgatctacatgtctgtttttgtaccagtgccatactgattttattattgtgtc
tctgtaatatatcctgaattctgtaatgataatccttccagcattgttctttttactttt
gatggttctagccatcccagctcttctgtatttccatatgaattttagaatagtattttt
cacttctgtaaaaggataagatggaaagtttgaaattgcactgaatctaaaaatacattt
tgttagaccagtcatttccataatattaactttatcaatttttctaatacattaattaat
taatttttatgctagtgggtacactgtcactgtcttcagacacaccagaagagggcacca
aatcctgttacagattgttgtgagccacagtgtcaggaagagcagtcagtgctcttaacc
tctgagccatctctccagcaactaattttatcaaacttagaacatatatttcctttctat
tttctaatgtctttctcagtcttgttcctcagaaatttaacatttccattgtaaaggtcc
tttacctgcatagttagctataatcttatatttttactttagtatatgaatgagagtgag
tctgcaatctctctgattcatttggggtttttttggtgttttattttatcctttggaatt
tttgttgttgttttgttggttggttggtttttgctgttgttattgattcagagaaaaata
gtggttcttttgtaagttatttctgtattctgacagttcactaaaatatttgtttgtaga
gattttctgatagaattttggtgttttcttatgcatagtatataatctgcaagtgaatat
agttgatttctttcaaaatttgtatcctttttgcttctttttcttacattaatgctactt
ctatttcatcaggcactagattgaaaaggagtgagaatagtgggcactcttgcatccttc
ctaatattaatgggcttgcttcatatttttctccatttagaatgagaacagacatgggtt
agtcagacatagacttttattagggcgtaattcttcatttctactctctctgagactttt
cctataaaagcatgctgcattttgtcaaagatattttctgcatctattgaaaatatgcga
ttttttctttaagttccttcatatgatttattatgtatattaacatgtatatgttgaacc
atctctgtatctgtgggataactcaaactatatcatgacgaatatgtttatgttgaacat
gtaagcatttaattgggtattttttaatctgagtttatgaggaatattggcctgtcagat
tttttgatagtttgtattgttttagttgttgttgtttgtttgtttgtttgtttgtttttg
ttatatctttacttggtcttagagtaataatggctttgtagaagaaatttggagtttttc
cttctgtttttattatcttgactagtttaagaaggtttggctgtagatcatctttcaaaa
tctgatagaattctgctgcgaatccatcttggcctggagttttttcgatcagaggatttt
tttttattgtttcttcaatctccccctttgttatggatatgttaaggttgctaatctttt
cttggtttaactttggttatttaagtaaatctagaaatttgttttgttttggtatttttt
agactttccaacttaaagaactacaggtttttaaagtagtccctgataacactggatttc
tttggtgcctgtggaaatgtctacctatccattgctgcttgtatgaatgtggattatcac
tttcattcttttggttagtttgggccaaggagctgttgatttagtttgtcttataaagca
atgagagaggagttgttgtttagcccttgccctaggtagaagccagtggtagtgaataga
gtagttttagcccttgccgtgagtagaagtagtagaagaggagctgttgtaataggagta
gtttttttttctctctgcttttttttttccattttttattaggtatttagctcatttaca
tttccaatgctatacccaaagtcccccatacccacccaaccccactcccctacccacaca
atccccctttttggccctggcgttcccctatactggggcatataaagtttgcgtgtccaa
tgggcctctctttccagtgatggccgactagaccaccttttgatacatatgcagctagag
agtagttttagcccttgccctaagaagctgctggggaagagagctgtaaaagaaaaagcc
tgaagtaaagttgctgtgtgaacccgaattggtgtccatgtcattcctgtctccgtgggc
agcaagaattgcagagaccaggacttgaaaacacagattttgaaagagctttcgagacaa
ccggccaccttcctggtgagagcacaggggtccgcccagcctgagaggtttctgcctcag
gccccgggcggcgggagcctccttggctcagggactcctcggggggcaggctgcacgggt
gagggtgtggaatacagaggccagccgtttctgggacaggtgagagccacagaggcggcg
ccatcttcggctccagaaaaccggccaccttcctggccaaagcaacacagcttctgggaa
agatcctgttttgggccttcatcttcagccaggaggaggtccaaacaccagataactgtg
caccttccctgaaagaggagagcttgcctgcagagactgctctgaccactgaaactcaga
ggagagagctagtctcccacatctgctgatagagggtaacaaaatcaacagaggaacaat
ctctaaacaaagacaactataacaactaactccagagattgccagatggtgaaagttaat
gtaagaatcctactaacagaaaccaggaccgctcaccatcatcagaacccagaacgccca
cttcgcccagtccagggcaccctaacacacctgaaaaggtagacctggatttaaaagcat
atctcatgatgatggtagaggacataaagaaggaatttaataactcacttaaagaaatac
aggagaacactgctaaagagttacaaatccttaaagaaaaacaggaaaacacaaccaaac
aggtagaagtccttatagaaaaacaggaaaacacatccaaacaggtgatggaaatgaaca
aaaccataatagacctaaaaagggaagtagacacaataaagaaaacccaaagtgaggcaa
tgctggagatagaaaccctaggaaagaaatctggaaccatagatttgagcatcagcaaca
gaatacaagagatggaagagagaatctcaggtgcagaagattccatagagaacatcggca
caacaatcaaagaaaatggaaaatgcaaaaagatcctaactcaaaatatccaggaaatcc
aggacacaatgagaagaccaaacctacacataataggagtggatgagaatgaagattttc
aactcaaaggaccagcaaacatcttcaacaaaattattgaagaaaacttcccaaatataa
agaaagagatacctatgaacatacaagaagcctacagaactccaaatagactggaccaga
aaagaaattcctcccaacacataataatcagaacaacaaatgcactaaataaagatagaa
tactaaaagcagtaagggaaaaaggtcaagtaacatataaaggcaagcctatcagaatta
caccagatttttcaccagagactatgaaagccagaagagccttgacagatgttatacaga
cactaagagaacacaaattccagcccaggctactatacccagccaaaatctcaattacca
ttgctggagaaaccaaagtattccacgacaaaaccaaattcacccattatctctccacga
atccatcccttcaaaggataataacagaaaaaaaccaatacaaggacaggaactacgccc
tagaaaaaacaagaagataatccctcaacaaaactaaaagaagacagccacaagaacaga
atgccaactttaacaacaaaaataacaggaagcaacaattacttttccttaatatctctt
aatatcaatggtctcaactccccaataaaaagacatagactaacaaactggctacacaaa
caagacccaacattttgctgcttgcaggaaactcatctcagagaaaaagatagacactac
ctcagaatgaaaggctggaaaacaattttccaagcaaacggtatgaagaaacaagctgga
gtagccatcctaatatctgataagattgacttccaacccaaagtcatcaaaaaagacaag
gaggggcaattcaaattcatcaaaggtaaaatcctccaagaggaactctcaattctgaat
atctatgctccaaatacaagggcagccacattcattaaagaaactttagtaaagctcaaa
gcacacattgcacctcacacaataatagtgggagacttcaacacaccactttcaccaatg
gacagatcatggaaacagaagctaaacagggacacagtgaaactaacagaagtgatgaaa
caaatggacttaacagatatctaaagaacattttatcctaaaacaaaagaatataccttc
ttctcagcacctcatggtaccttctctaaaattgaccacataattggtcacaaaacaagc
ctcaacatatacaaaaatattgaaattgtcccatgcatcctatcagatcaccatggacta
aggctgatctaaaataacaaaataaataatagaaagccaacattcacgtggaaactgaac
aacactcttctcaatgataacttggtcaaggaaggaataaagaaagaaattaaggacttt
ttggagtttaATGAAAATGAAGCCACAACATACCAAAACTTATGGGACACAATGAAAGCA
Primer
(+)ttggagttgtttttgtgcatcatgaaagatacagacctaa
(+)tgctttcattgtgtcccataagttttggtatgttgtggct


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