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Mouse element [ mm2087 ]


Position: chr13:15,335,858-15,340,594 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ATTAGACCCCTACCCTCAGAgctcagggaatcacatggaagacaagagaaaaagtgtaaa
agagagcctgaggggaaggtagacaccaggaaaacaaggccctttgaatcaactctgcaa
ggctcatatgaactcacaaagactgaagcaggcagcacagcatctatacaggtctgtact
agatactgtttttattatagctttcagtttagtatttttatgggattccttagtgtataa
accagtaggttgctgattcttgtgcttgctctttttgggggttgccttgtcaagctttga
tgcaatggctttgctttcttttattatatttatttttaccatgtttggttgttatctctt
aaaagtctcttcttttctaatgagagacaaaaagggagttttttccagaggaaacaggag
gttggagtaactgagaggagtagaaggagacaaaactcttaaaaagtatatactgtgtga
gaaaataatttattttcaataaaataaaaagaatgacaaaaaaatccaaagtttccttta
aaacctaaaatctctttaaaattcatcctctcaaattaaaattacagtttttcccataaa
atcaaaaataagttaaatacttccttacttcaagagggactactagggaaaagtcacaat
cagatcaacgcaatttccaatatctgggattcactcaaaatcttctgggctcctccaaag
agcttgggtcaattctacatctcgtccctctgcagcacacacagcttgtcttctaatctt
aggcaggtttccctccaaagctgctgttgttcttgttggttgaaatgtccatagtactgg
catctcccagtgctgtggtcttctgctgaaattttactgtcctttcactgacagcctctc
ctagtctgtctttattgtgtcaaacctcaacttttctgcatgaccccttcagtcctgtgt
cttcaattgctactgatgctgcattttcacaaatggcctccctgccctctcacagtgcta
agcctcagtgactctctaagacacattcaggccttcaaaaccaataccacctcagtgact
tttacactgctaagttcagctgtcagcacaatatacaaccttggctgcctctggaataca
ccttctgtgtgctcactatcaggaaacacttcctagaagatttcacctcaatgatgctga
gttttttgggggtgtgaagagggttgtttgtttgattggttttggttggttggtttggtt
tttttgtttgtttgtttgtttgtttaatcaccattaatttctcctctccagccgacctgc
attgagtattccagcaaagcaaagatttcactttagtagtttctggtatcttgataatca
cagctgatttggccccagctaatcagaagcacagaaggttaatccaaaataagaaatggt
cccaatagagtaaacttttctctgaaacttcacaagccagacctccatctgctgcacaga
tttcaatactcttatcttccaagctcctacagaacaactcaggcagaattgaacacgcca
tggtttttcttgcacaaagttccaaaatacttctacagttcccaaaacacattggcaggt
ctgtcagagcaatatctcataatcttgatacccacttgttttagttatggttactattgc
tgtgatgaaacaccatgagcaaagcaacttggggaggaaagggtttattcagctgacgtt
tccacatcacaatttatcatcaaaggaagttgggataggaactcaagcaggagcagatac
agaagccatggatgagttctgcttactgggttgttccccatgatttgttcagcctgcctt
ttttttcttttaatggaacccaagaccaccagcccagggatggcaacatccacaatgggc
tgggccctcccccatcaatgactgattacgaatatttcctataaccagctcttatggagg
cattttccaaattaaagttctttcctttcagttaactctagcttgtgtcaagttaacata
aacctattcagcacgcttacccatctgtgagctcggtttgctgcagtaatgacccagtaa
tggccccgggagacatgtgccactggagaaatagacaatcattttctggttaaaattaga
tccatttcacaagttggaacccaaacatgacaccattattaagagcactacataggtcat
agaccctaaaggagaacatattattctgctaaatggacatagtactaaactaatgctctg
cctacctaggcaagttctcctcaaaatactcagggtatccacaaatatccttagcaaaaa
taagcatggtgcaagaattaccattccaatttttaaggtatactacagatcatagtaata
atagtatgttactgtcacaaaaacaaacatgcagaccaatggcacaaaatagatgagtca
aatatgagtacacatagctatagccatcaatatttaacaaaagtgccccgaacatccact
ggaataaggacagtatcctcaacaaatcatgttgggaaaatcggatcttcatatgtagaa
aaatgaaattagaccctacttttcactttgcacaaaaactaactgcaagtgagtcaaaga
cctaaatgtcaaacctgaaacactgaaagttctggaagaaaacccaggcagtaccctata
aaatataggtgttggaagggtgtttctgaataggactccatttgcccgggaatagagacc
aacagtcctcaggtgggatctaataaaagtaaaaagctttcacacaaccaaggaagcaac
taatcaaatgaagaggaagtccacataatatgaaaggacatttgccatctgtacatatga
tggattattaatatccaaaatataaagaactcaaaaaataaagtcgtgacaaaattccat
ccattcaaaaataaaaatatgggccctagaactaaacagttctcaaaagaagaaacaaaa
ataagtaaggaatttctccaaaaaatattcatcatccttagttaaggaaatgcacattaa
tataacttcaatattttgtcttaccccagtgaaaatggctaagatcaaacatgtaagaac
caatgctgaagggcatttgggaaaatggaaatcctcatttgctgttgatggaactgcaaa
ctgatccaggtcctctggaaatcagtgtgaagaaatctcaaccagaaaaaaaataaatct
tgcgagccggccactgtcccgaccagaggacaggtgtccacctggctcggaagtcctcag
cctcagcctcaggagcagcgggtgccaccttggttcctggactccgccgaacttaggaaa
ttagtctgaacaggtgagagggtgtaccacagaacgggacagcttctgggacaggctgag
ccacagagccgctgaggcagcacccttttcgggccgcagacagccggtcaccgtcctgac
cagaggacaggtgtccgcctggctcggaagccctctgcctcaggagcagcaggcgccatc
ttggttcggggactctgacgaacttaggaaattagtctgaacaggtgagagtctgcacca
cagaagctgacagcttctgggacctgccaaagcaacacagcttctgggaaaggtcctgtt
ttgggccttcttcttcggccaggaggaggtccaaacacaagatatcttcacaccttccct
gtaagaggagagcttgccagcagagtactctgagcactgaaactcagaggagagagtctg
tctcccaggtctactgatagacagtaacagaatcaccagaagaacaatctctaaacagag
tcaactataacaactaactccagagattaccagatgacgaaaggtaaacgtcggaatctt
actaacaggaaccaagaccactcaccatcatcagaacccagcactcccacttcgcccagt
ccagggcaccccaacacacccgaaaacctagacccagatttaaaagcatatctcatgacg
atggtagaggacatcaagaaggactttaaaaactcacttaaagaaatacaggagaacact
gctaaagagttacaagtccttaaagaaaaacaggaaaacacaatcaaacacgtagaagtc
cttacagaaaaagagggaaacacatctaaacaggtgatggaaatgaacaaaaccatacta
gacctaaaaagggaagtagacacaataaagaaaactcaaagtaaggcaacacagggagat
agaaaccctaggaaagaaatctggaaccatagatttgagcatctgcaacagaatacaaga
gatggaagagagaatatcaggtgcagaagattccatagagaacatcggcacaacaatcaa
agaaaatggaaaatgcaaaaagatcctaactcaaaatatccaggaaatccaggacacaat
gagaagagcaaacctacggataataggggtggatgaaaatgaagattttcaactcaaagt
accagcaaatatcttcaacaaaattatagaagaaaagttcccaaatctaaagaaagagat
gcccatgaacatacaagaagcatacagaactccaaatagactagaccagaaaagaaattc
ctcccgacacataataatcagaacaataaatgcagtaaataaagatagaatactaaaagc
agtaagaaaaaaaaaggtcaagtaacatatgaaggcaAGCCAATCAGAATTACACCA
Primer
(+)ATTAGACCCCTACCCTCAGA
(+)TGGTGTAATTCTGATTGGCT


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