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Mouse element [ mm2086 ]


Position: chr13:15,279,861-15,284,964 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTATTGGCAGTTGATGTTGGaggagaaaaaaaatcacatttgaaagaagagtgaccactg
acaggttcccagtggcccagtggataactgcatatctatgtacatacacacaagtaatat
gaattaaactcattgtgtttaaacaaacaaacaaaccaacaaacagattaggagatagag
agatagatagagagataaagagatagatagatagaagacatgaatttgtgaagtagatgt
gatgaaggggccttgggggaatttacaagagaggagaataagggagatatatatatcaag
atacattgtataggtgtatggtattttcaaatacattttctaaaggaaaactagttagtc
ttttactcatgggtggcatgatacacactttgtttgtcccagaagcttatgggctttaga
cactcggtttgttcaacatattttagaaaagcctaggtttcatattttgtagtttctcgt
gttgtgttgccccagagaaacttatttccgtgcatgcctccagggaagatcctgccagct
ctaactcttctgttgtcaggcatgtatgtatcacccaaacacatgcaatagtgcaccaga
cactgattctgtcacattgagcatacttaacacatgtgagcttcactttcttcttctatg
agggtaataatacctaagctgtagagtagttttaataatctacagagtattttgttatta
gtctggcaggcatacatgctatgatgatctgcacattctcagaatggttactgaacctag
gaaatgtgagctcttatgaaactagcttccttccctgctctgaactcagttcacatcctc
ttaaaagctactggttgctttcctagtgtcttagggttcccattgccgtgaagagacaac
atgaccacagcaactcttagaaagataaacatttaattggggctggattacagtttcaga
ggttcaggccattttcattatggcaggaagtatgtcagagtgcagatggacatggtgatg
gaggagtgaagagttctacatcttgatcctaaggaaaccaggaaaagtctgtctcttctg
caggcagtcaggaggaggagctcttccacattaggcttgaacacaggaagagaactcaaa
gcctacctacagttgacgcacttcccccaagaaggccatacctattccaaagaagccata
cctcctaatagtgccactccccacaggccaagaatattcaaaccatcatacctagtatcc
ccccatgatgtttactccagaactcagtgagttcagcttaatatggccctactgggctgg
agtgatagttcactgattaaaagcactagttgttcttccagaggtcctggcttggttggc
agaattgacatggtaactcaaaaccatctataactccagttctaggaaatctaataccct
cttcgggcttctgttttcaccagatacacaagtgttgcacagacatacacaggcaaaaaa
atatatacacataaaaaataaaaaggataaataaataaataaataaataaataaataaat
aaaaatgtccacttcctgagacttccttgcatccagagactatcacttgattccagtcta
cctaaagttatataagctgaaatcttggttagggacttcaggatgcttggtgaagggctg
agcatggcaccaggacttttcgggtctttgcctttggtcctcaactaggattggcagatt
tattttgatataattttaaatttaaatcaacaaggtatcctgtatgtttgtttataattt
tggcagcactccccctctgcttttaattccttctccctgtgtaataggtagataccaaac
caatacataagaggaagggataatggtggagaatgttgagggatacaaccagctgaggtc
atccaacatcaggtctctccaacagcctgtactagttaacctagcacttctcttgcagat
aactcaatggaagccttatctggtgcgcttgcaggcatcactttattctcattttctatg
accttctactctgttatattcaactgatggttgcaatgatcactttcatgctatcatccc
cccaaaaaaacctccatttccttgctttcctctctttgtcaagcacactttataatagtc
tttaacatgggcatattatattctctaaagtcatacaaaaaaaggctttaacctctcaag
agttaaaaatgtatccctcaaatgtccctgaagtacaatattataaatatatctggccac
aaattctaaaatcagtcatacttttcattacatgcatttgcatttgattctgtttagtta
acaaatttcatagtttgaactttaaaacataaaacttttcagaaaacaacctgctttttt
ttcttcctctcaactaaacatcaaagtaaatggaaggattgggacctgaagagctctcaa
tcccttggcctactcatagatcccccacccccaccacaagctgactgccaagccaggaac
taatcattacattcagtttccaactcatttccccataattgtgtcctgtattgtgcacca
gggaatattgttaaagtgatcatctcagaagactactcactgtctcagaaacctctcttc
ctccccagtatattccccttgtctgattccccagttcctggctagcagacacatggtttg
aaagtggccaacaattacagccttgtcacttacccagccttgtctagccatactaacttt
ctctctctggcctgccagcatacacagttccatttcaagttccatgcccatgccattaaa
tcctagagaataccctctcctctctactggttactctgattcttactgcacatctcaggt
ctggtttcctgagctgctttcagctacactgattcctctctgcagtacaatcctattcag
ccctaccttgacttacacaagttcacattgtcacctgattaaaaaatactgcctcttagt
ataatgtggtttgaacagatataatcagagaaaaaaatagaataactgaggtgaaaaagc
ttatggaactcttctgttccagagggggaaatatatttttttctctgcttccaaggagct
tccatttcactcacacactgatacatcatcacctctttccctggcagccactgacagtaa
cacagagcatcctaggctgcacatgaatggctccacatcatcattgtttattggtggctg
caatatatcttcttacggtattattttcagttgtcacacagtgctgaatgcttagcctct
ccccttagattataccttaggtttccttttcctgttgctgaaaaagtactctgacaaaag
catcttaataaagaaaggagtttattctggctcatagttcaaattcaaggatcacaacag
cgaggaagtcaagatggcacaagtttgaaaaggctgaccacatggcatccaccatcagga
agtaatgagtgataaatgcttgctcctactccattctctttctccacttatacaaatcag
tattacagtcaaggaatggtgtcacccataacgtgtgagtcttcccacttcaggtaatgc
aataaagataacctgcacagtcatatctaaagacaaatctcccaggtgactcaataacac
attaattagataccacatacaccaaacccaatcccactccttggttttttgtaaatcaag
attttcctgtatttttcatcaacaatatcaagtatattaatatggttcctcaattttata
aatgttgctttatttatcattccttctaaaaacattaaggggcttgtacaatgcaaaata
cctagcttatgatgactgaataaggccaagagtcttacaaaaaatgaggggtactgggga
acaaatatttgtgattaggacatttgtaaccaaaattccctcctgttcaggaatggttta
cagtgacaggtcatattgaagaattcccacaagttatttccacaagtttatctggacaca
gtaacaagtcattgcctataaaccatcatagctaatgccccccaaagggacaactggtca
gcttgattgccatcagaaggacacaatgtctcaataagttattaattatcccctactggc
aaccaacctttataaagaagtgaacactgtatcatatagatagcaatgcatattttaaat
ccatgactcaaacaaggcagacatttatatatgtaacttttgtgcaaattcataggaaaa
tctgttttagaagtttccagggatgtgttatctttagccaagtaactcatggccccagca
ttcactattatagtggttgatctcccaggacatttccaggatatagctttccaaactaaa
taccaccttatggttcaaaacagctgttagtccagtcattatttctatgtacagttaaag
aagaaagctaaagtgggagaaagaatttccctagtttacttgggtccatgccctttaaga
agctttctaggaactaactacctcacattccagtttctgtataagttagagcctctcaga
aaatctgagccaacagaatataaataggtatgtaggtagagagtaaaggacagattgatg
tgatatgatgtgatatatttgataatgagaaagtacttgctatggaaattgcctcatgta
ttatggaaagtctcatatgtgctgacaacaggctggagaatgggaatgtcaaaggcatgg
aacagtttaaggtcagagacctcagaatcaagtgatgtaactctcagtatgaggtattgg
acatgacaacccaggggacagaagtaaaagccttcagtcataaggccagagaaattggag
ctctgggagatgcagggaaacaggatctctgcagtagagagtgcacatcactgttcctct
gcctggtggttctctctaggccaagaagattgcgcccacccacactggaaggataggtct
tcatcatcaatcaattgaattgcatatgagctgctctggggatcccataatgcagtcaaa
ttgagacaaaggtttgcccaatgccaagttcctctcttggttcaGGACACATCCCACTAG
CATA
Primer
(+)TTATTGGCAGTTGATGTTGG
(+)TATGCTAGTGGGATGTGTCC


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