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Mouse element [ mm2085 ]


Position: chr13:15,275,179-15,280,366 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AGAGCCTTAATGACCTGCTCacgtcttgggttgtttccttgtttgctgtttgtttgtttg
tttgttcgtttgtttgtttgttggaacagagtctagttaggtggcccttgatggcctggt
actttctatgtagataaagttagcctaaaactcttgacaatcagcctccacgtgctgtat
tacaggcctggttctcaatcaccccttaaagttccaacctctcttagtagattgcactga
gaactgactttacaacacatgacctttgagaaacaaattcaaagagaagtctatgtcata
tatgtcctgcccaggcctctgagggatgtgtacaagttgtcactaagacagatgaagaag
ccctagcccttactactcattgctgcaccaacccttatttgtgtttttctctttaaaaca
cttgattaattcatgtggaaaggaattggttctcacacagcacctgtgtcctctacaatt
tcttacattttacagcttctcattctaaggactataccaagtctctccaaaaatcatttt
cagataggtataggttttaattttaggtatttcttcctaagtcatgatactgatttttat
catgtttatccttcaagcaaaatgtcatactaagaattctctttgttttttggagggaca
ctctcattgcactcacttcatggaagagcaactaggctctaaagccatgatcagtagcag
gaattgatgtgccttgtgctaatctgcctctctatcctccctgggtgatcccttttagtt
cccctccagggtagggctcctttttctaattaccactgcctacagtgactatccacctac
tcttgcttcctcagccccaccccaagctcctggagctgctcattcttactttctaatcat
ccaaaatgtgcatttggacctctaacatatactgttatatcatgttattgcatgtgtgca
agaataagattgtatttccatcactcatcttactaggagggcaatgggcacaggcaaccc
tatgctgatagctaaaggaaacccatccccagacagacacctctgtatagagtgcaaggc
ctatagggagatccagaagccagcctgttgccttgtctctgtatttctaagaattgtgtc
tagacatgtcaggtcatctccttggcctgtatgaacaccagttccactccattgtttcag
aagttccatccaggtttaacactctctaaatctaagtcttgcttctgtgaaggcattcct
gtaatcccagccaatactgatcacttccattcttaattaagtcagtatttctcagtatta
gaagtctgaacacagtttgacagaaatattttatactacttttggatttaggaagcaaaa
aacttgtagcttgagggccaacaatgatgttatgcttggacacgtcagtaggaaagagtc
tgacactatgcctgggcatgccagcattcgacaacaagaaaggtgtggggtgcgttaagc
cctcggtgtagatccctgtgaaccttttgtaattttgcatgtttgttttttttaattttc
gtattgaatatgtttataagtctcagtttcttcatcagaaaatttccagaggttaatgtt
gccctacagactttgaacaaatgaaacctcgtagcaaacacataaaatatctatttctga
acacaacagcatacacacacacacacacacacacacacacacatatatatatataaaata
aaatatgtatacatatattatgtataatatgtataatataatatgaaatattcccattga
ttatacctgacatgatgtctgatatatacagttatctggaactccaagaaacatgttatc
tcatgctagttttgcttcagtttctaattattctaatccactaaaataatgttgtgactt
tcaataaatctttaagtacaaaaactcataaattcactttttttccatagtcacaataga
cttggttatacagctaaaggaataccggagttaagagaatctaaattcataggttcacat
agtcatagaagactccttatcaatgcagtctagctttaaattttgagaattgaaagaaac
tgaaaaattcatctttcttgctttgctgataaggacaacggaagtgggacacacaaggca
aatcaatgttacaaagtgaaataaaacttcagtggtgacagaaagaactccattttttag
aattttcttttgttttgtttttcactagatttgtgatggttcgtatatgcttgtcccagg
gagtggcaccatttggaggtgtggccttgttggagtaggtgtgtcactgtgggcatggga
tttaagaccctactgctagctgcctggaaaccagtattctgctagcagcctgcagatgaa
gatttagaactctcaactccagctataccgtatctgcctagatgctgccatgttcctgcc
ttgatgataatggactgaacctctgaacctggaagccagtcccaattaaatgttgtcttt
ataagagttgtcttagttatggtgtctattcacagcagtaacaccctaagataagatgca
ctgaaatgtattcaccaagatgctatggctgcctataaaaaggtttttattgactgaagt
catctctcctccctgcttttaactttccagtatggtttaggagtaggcaaagaggattat
tgaagatagtactggaagttgctatgcaggtgccacaaggtcttatcatgcatgctacaa
tacctctctgtgaggcaacatgtgtccactgatgtaatagtggtgaaactgtttatggag
gtcactacctactttcttgtttagagttgaggccagattcccaggatagaatttatgcct
gatactgtaagcatgttcaaagcacatgactaggaaagtcttgggctgtaggggaggaca
tattgatattttttttctaatagtcatgatatcaaaagaccttctagatattggctattt
attttgttttgttctgaaaatgtcatgcaccggtactgtgtttacagcattttcacccct
ctgcaactcttcccatgctcctatcacacatctccctcacatgcttacaacctcttcttc
ttaattatcattacatatatatgtatgtacatatgtcacatacaaaagacactatctcac
agcctactccctggtcctttggctcttacaatcttttcatgatttttcttggcacttata
tgtaaaagttgtagtgtagatatattcattcagggtggacatgccatattcagggttctc
tgcagtttgaccagtggtagatttctaaaatggtctccatctgttgtcaaaagaagtttc
tttgatgagaaatgagattcatactcacctgtctgtgtaagagtagtgtttaagaagaag
ttgggaattacagtcatttgggaaagtggcagtaataggttctccttctagatccacaac
ctcactagtcatgggatatgaattccctcttattgaacaggctttaaacacaattagaca
gttttagtttgtccccaacatataattgctagtattgcacttcatcttgccatgcctgtc
attgctgtggtttgttgggtttacagatggttagaactattggttgcttttctcccttga
tctttgcatagcacatcagctacaataagagctagtcctcagggaagaatccttcatgcc
atttccttcttgatttctgttttttttttttttttcttcactgcagtatttatagtaata
gggtcttaccttaaagttttgggagatgatcaaggacaataggaatagagtatatttact
ctgtagtctattcaactttcctgacccaaaactccaattttctatgcccagcactggaaa
ttttattagattgtgtggtggtttgtcccctatagggtcacatatttaaacacttggtct
caagatggtgatactgtttgttaaggtctggagatgtaaccttgctaaagaaggtatatc
aaaggccttaatatttctaaagccagtgccattcccagtgcactctctctgtctttgtat
ctctctcattctcactccctctccttccctccctctttccctctctttctgctctgtgct
cgtggcttgaaaggtcagttttaccttcctgtaccagcctgctgccatcatggtgctgga
cttctttccctctggatccataaactcaaataaaacattccttctatagttgccttggtc
gtggcatcttatcacagcaacagaaaagtaactaataaacatagtcaattgctcttggta
agtagatttttgctgcacccaaccttggtcagagaagcttcttgttacagggggtagcag
ttaatgcacagagtcactactgaggataagcaactgtgcatgctcagctagagatggaac
atctatatcatgctcttccctactcaaggctcagagaacaatgataaaggggggatagga
aggatgcaaaagccataagacatggaggaatgctgtcctctggacatagcatttctgttg
catatataaacttaaagccactatagttacctatacagcatctatacaagatgaagcaag
ttaaaatttctatcacaaagatgagagggtatgacaaggtcctctgcccctagtctgaag
agttattggcagttgatgttggaggagaaaaaaaatcacatttgaaagaagagtgaccac
tgacaggttcccagtggcccagtggataactgcatatctatgtacatacacacaagtaat
atgaattaaactcattgtgtttaaacaaacaaacaaaccaacaaacagattaggagatag
agagatagatagagagataaagagatagatagatagaagacatgaatttgtgaagtagat
gtgatgaaggggccttgggggaatttacaagagaggagaataagggagatatatatatca
agatacattgtataggtgtatggtattttcaaatacattttctaaaggaaaactagttag
tcttttactcatgggtggcatgatacacactttgtttgtcccagaagcttatgggcttta
gacactcggtttgttcaacatattttagaaaagcctaggtttcatattttgtagtttctc
gtgttgtgTTGCCCCAGAGAAACTTATT
Primer
(+)AGAGCCTTAATGACCTGCTC
(+)AATAAGTTTCTCTGGGGCAA


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