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Mouse element [ mm2083 ]


Position: chr13:15,265,236-15,270,469 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTGCCTTTCACTATGCTCTCctcgttctctgaaaagattccaccgcctcctagcagctca
tagtagtcagaaagaaaaaaaaagaaaagactgactagggactgttagaattgtggcaag
aagcacagcaacagaaagtagatcttattggtgctctagtcagcagaaaaaacaaaaaac
aaaaaaaaacaaacaaacaacaacaacaacaaaaaacattgtatggtctctctcctctaa
ggctcctagctctaaatctttacatatgagtatggaatatggagaaacttcagaaacaag
aagagtaaaagtgggtcattgtttggaaggagaccatagaagaggaatggcaggctacat
gtgatctcaaggggaaaatgggaaaaccaaggatcgttagttgtgtaggagcagggagaa
gaagaagaagaagaagaacaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagaaggaggaggaggaggaggagga
ggaggaggaggagggaggagtataatagcaggaaggatgtacaaaaaggcatatggtgtc
atcctattaacaatctaagtctatgtatacagtcacataaaaaagcttcaatgaaatttt
cccatctggactgacaatgtttcccatgagagcaatagactatcttaatagaaccccgat
agcaggcataaaaagcactccttgtatttgactagggttctccaaaaactccccaaacat
tacaacttattgctgtcgccattgattccccccagaagtgtcaggtaagtccctatggct
aaacagagcagaaacttcaaacacaggatgcagaagatctgagctggtacatggaagcct
gtttcttgaagtcaaactattatggtaccataaggtgtcatgaaaattcccaaaagggaa
agcaaccaatagttctacctaggtatggtgcctattaaactgtaacaatggccagtatgg
tgtgataagcctaagggtgcaattttgcacacatacattggtggtgatgaccacagctct
ctaattggacttttccaattaaggtccattcaacatgagggaaaattgtgcttgctacta
gaaacctactcagctacctggaatgtgtaaagtcacagatctgggaggagaacctacagc
cgccactgtattaaaccaatacgatccctaagtatattctaaatatgtgtctttatatac
acaaataaatgtagccttcatccatcaagaaaactttcctttgcagcagaggtaagccat
tacagaaaattccaagttattaaaacgctgacctgtggggcccaatcccaaatgatacag
ctacagcacaactcttacacataatgcgcaggaatcatggcagaacaggagggcagagag
agtgcaagatccagaggaacatgaaatttcctgagactgtgtctcctagaattatcaggg
aagctatgtccaagaagtctaaccaacatgtctgcctaaacatgacctgaccaaggatga
taccaatagacatgataacatggaaagaacatagatcatgaggccttgaccatagacaag
caactaaaggcaactaagaagtgctgtgagtaggagagattgtcttctccagggaaaagc
acaccaaatgacttacaaattatcaaatgctcaccctgaaaacatacatacaagtaacac
tttatagacgaagatagttgtatttatatatttaggaatacacacacacacacacacaca
cacacacacacacacaaggaaaaacaggtcatgaatttgaatgagagcaaggtgaggagc
accattcactttgcaagaagaaagggggtgaaggaaagaatgtagttacattaatctcaa
aaagaatgtgacagtttttttgtcttcaacatttttttcaatttttattatacattttct
tcatttacatttcaaatgccatccctaaagtcccctataccctcccccgaccttgctccc
ctacccacccactcccacttcttggccctggtgttcccctgtactggggcatataagttt
gtaagaccaaggggcctctcttcccaatgatggccaactaggccatcttctgctacatat
gcagctagagacacgagctcttggggggtactggttagttcatattgttgttccacctat
agggttgcagaccccttcatctccttgggtactttctctagctcccccattgggggccct
gtgttccatcctatagatgactgtgagtatccacttctgtatttgccaggcatggcatag
cctcatacaagacatctatatcagggtcccttcagcaaaatcttgctggcatatgcaata
gtgtctgggtttggtggctgattatgggatggatccccgggtggggtagtctctggatgg
tccatcctttcgtcttagctccaaactttgtctctgtaactccttccatgggtgttttgt
tccctattctaaggaggaatgaagtatccacactttggtcttccttcttcttgattttct
tgtgttttgcaaattgttatcttaggtattctaagtttctgggctaatatccacttatca
gtgagtgcatatcaagagacttcttttgtgattgggttatctcactcaggatgatatcct
ccagatacatccatttgcccaagaatttcataaattcattgtttttaatagctgagtagt
actccattgtgtaaatgtaccacattttctgtattcattcctctgttgagggacatctgg
gttctttccagcttctggctattataaataagactgctatgaacatagtgggttacagtt
gttttaagaaaagaaacaagagtgaaagcagatatcaattaaggatgtgcaaaaaacaaa
gagaaattcatcaaaagaagtcaagcgaattgtcagcatatgtattcaaaatactcagca
tcagtaactacaaagcacctcatttcagcagccgtggctgttgtcaaaaagacaaaacac
agcttgtatggtttgaataagaatggctcccatgggctcatatatttgaataagtggtgc
ccagtttggggacttttaaggaaagattaggtgctgtggccttattggggaaggagtgtc
acccagaataggctttaaggtttcaaaagactaaccctattcctagtgttcctctcttgt
ctcctgcatgtggatcaagatgttagtttcaactgcttaagatagtgtgcctgctgccct
gccatgagggaagcaaccctctgaaagtgtaagcacagataaatgccttcttttataagt
tacctcagtgttttgtcacagcaatagaagactgagacaacaccaaatgttggtaagtat
ttcgacaaaaagaaacccttgaatactgttggtggaattaaaggttagcataaccattgt
ggaaaacagtaatgggaaagattcctcaaactattaaaaatagaagttctctatgattca
cattcttactattttcaaaggaaattaattcagtgtgttgaagacctagctccactcctt
tgtttatcatagttctatttacaacaacaaaaacatagttatatccatcagcatggatgg
ggggggggatgtaatgtaaatgcccagtgggaaactggcaatgaagaacattgctgtttg
tgagagcactgattaggatggagacattatgatatagtgaaataaactaagcacagaaat
aaaaatgctctttgatatcactcatatatataataaattcagggaaataaaaaagttgtt
gaggtttggtctgttgctatgtattataatgctaaatactggcctcccaagacctggttg
ccctcacagatgaaggaatcctcatgtactccaagtcatgctatgtgaccaggctcctta
agttaaacatattagttgtataatgatgccaaaagcctatggctgggcagaagagaggta
ggtagagtttcagttcctagacttggggtctaaggaccacaaggaggcaagggagaaggt
ggagggaagagaagataccatggggtaggaatcctgaaaacatggtaatgagggccggca
agtcggaataagagtggcctagacaggacatggcaagtcatactgtggggttattagcag
agaagcagatactatagcatagaagatacatatctgcccagcactagtactttaaagact
tattataaatataaaagattgtgtatattttatcagggatctgagtgatcaaaggcagag
tagaaacccctgagattaaatgcttactacaacaaaagtagaataaaggtcttgagaagt
tggagtacctagtgagtgggggatgggaagacattgaaggaataaatgtaagaggttcat
tgtttagcatcataactacaataaatgacaacatattcttaaaatacaaaaagtgagtaa
gagttctcagcagaaataatagctatgtggggcaatgtttgttagttagactaattctat
gatatatatatactcttacatatcattttggatgggataagtatagataattttattttt
caacatagaagaaaatgacagcaggaaagaaggaggacgagagaaacatgggagacagaa
tagagaggtaaatgtatattggcattattgagtatgttatggttcaaactatgcagaaaa
agtcaaatggaaattttttaatggcctcctttgtcatgtaacacatgctttaatactcag
gcataagcatgcattgaagtcacctggaggctcactaaaacacagatgccatgtgttgct
acagatactttgtgcagtaaaaaccaggtgtggcctagcttctcagatgttgttgttccc
caggcctgggacaacactttgaaaagtgtcacattggtgtggcagaggacatccttgtct
gtgaactcagccttgtgtcatcttactgacatcctactctggctttgcacaagtaagttg
tgtgctaggagttggcgaaggctaccatatcatatccacttcttatctggtatgattggg
tctatgggtaaaataaaattacccatgtcacataattaatttgctttattcctcctttgc
tcccaatgaaaaggttgtagtgatgcgcacattaaatgataagtatattaggacAAAAAC
TGGAGGTTGGAGAA
Primer
(+)CTGCCTTTCACTATGCTCTC
(+)TTCTCCAACCTCCAGTTTTT


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