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Mouse element [ mm2081 ]


Position: chr13:15,175,122-15,180,116 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TTAAGCCCAAACATTCCTGAgtatagtttataccaagattttttcatttcttcttctagt
aggtagccaaaacgtctctataaaaagttctttaagtgtagacttttctctccatttctt
ctccacttctagctccagtctttgataattatataaaaatctatatgtatgcgtaataaa
attaattttaaaaagtgatgaagaagtaaatacatatacaactatatcatgtaagtgggt
ctcaagactggagacatagttcatcttccttattagcatgcaataaagcgtgagatatga
tgtaagagtctgacatcactccttgatatttgcatactcatgtgtttcatatggagaaag
atttaaggccatgaagtcatgtgtttgaatacttggtccccagttgattgcactgtttga
gaaacattaggtggtatggccttgttggaaaaggtatgttactgggggcaagtttagagt
ttcaaaagatgtatacaatccccattgtctccccttctctgcctgtggtttactctagat
gtgacttctcagctactactcaatttcttcattactacttgcccatttccatgcccctga
gccccatgatgggccatggaatctaaatcctttaaaactataacccctaaattaaaagct
ttttgaaaagtaacattagtcatggtgttttatcacagcattagaaagtaactaagacat
taacgtatctgataaaagctaggaataaatttattttcataagaaaaaaatttttgctta
ataaaaacactgtaaaactgagaacaaaagaagtgaaatttatgaacagaaacttcatag
aaaaattataccaaaaaggaaaagtttttctttttagttcttccaaatatttatttaaag
ggaaatgggtttataagtaatacaattattcacaagagttctctttacaattctgcaggt
ttttcttgtctggggagtatgctaggaatgtcttcttcataagatttgtaccttggagct
agcctgcctgagcttgctcacctgtaaacagcctccctaaagtaaatgtgcaagctgccc
cacaaaactttctttgcactcctgagagtagaaacaccatttccataccatgtaaaaaca
aaacaaaaacaaacaaacaaacaaaaaacaaaacagaaaagccacagtgagtgtgactta
tatccagaatctaaacatatgggaagaccctctagcaccagtcactttcatctacagatc
tacactttttttctctaaggaactctagaatgaaatacaaaggaacaggttcaagaaaac
catcacatttccttgaatattagtcatcatcatggtgcaggagagattgctaaaggagaa
agacagtggagaaaggggagctgaaggaagaaaaactgaaatatggagaaagatttaagg
ccatgaagtcagaaagacctaatgctttgaacagtttgtaaaataaaataatgcctttaa
ggagatgatggccctggaatgctctgtaaattatttcacaagtagaaagggaatgtgaca
caaaagaaaaataaacatgagagagggaaacaaacaataaacaaagcaatcgttgaaatt
attggaatagaaaaggagaaatatgaagaaggaaaaggcaagaaatgttgagaaacaaag
agaataatagggaaagagactttattctcatcaaagttagacacagagaatttataaaca
ctgtatccaaactgctaatggatgactagtgatgacacaaagagtatgagctttgatcca
gaaacgtatctgctagtggtgcctagagatgacatgaagtgggaggggctttgattttga
aactcattttcctaccttaggatatttcagaggaaatcaatgtcccaccccgctctgaag
caaatttcctcaagaccacagcataataatagaacttttcggtcttttctgcaagctgtt
aaatgaatttctccattctattttgtgtcttcacctaagagagaattttaaaaaggtgct
cctgacacacaagccacaattgaactgatgagagcaagggaaatggccagctattgcatc
atcagattgtgctgctgtaactgaagtccttacataaccaccctgcaaatggcattggga
ttatggaactctacttcctatagatgtcccattagcataacaaagaataaaacccataga
aaatgtgcctttactgaggccccagaaaaatcctacatttaatggctgaactcattattc
agagaatgtattttcatcttctaaagactgattgtaacagaagaaatctcccttctgtga
tgctctgataaaatctgccccatcacactgccaggagtatttggcacacatttgataatg
tatgaagttgtgcagacagtatagtgaacataagtcctaaagagcctatgagcaatggag
tgggaagaatccctgagatgaggagaaaatggagagtgaattctgattgaatcaggcaat
atgaccaagaaactttaacctatggggcaaacatgaatggctgtttccattacaagtgtt
aactttatgagtttttctgaaacctacatttgacctctgttctgaaattcagtctgcact
ttgactatgccctcaataaggataattccaaaaattaagatcttcagggtctggaagatg
agaaggatttgtagaatgacaagagttctactctctcacatgtgcatccagccttgaaaa
attaaaatttatttatttttaataaagaaataattatataatttccttctatctccttca
tccaaactcttccatgcccccactcccattgcaaatttattgcccatttttctttctttt
ttctttctttctttctttctttctttctttcttttttttttttttttaagacagggtttc
tctgtagccctggctgtcctggaactcactctgtagaccaggctggcctcgaactcagaa
atcttcctgcctctgcctcccaagtgctgggattaaagccgtgtgccaccactgcccagc
agcccatttttaaaagttattgtagttgttggacccatttactactacttgcaatgtata
tgttttaggaatgaccactcagtattgaacaagcaattatggaagtcatcccttgagaga
actaacttgcacactctcagggctgtcttcaattgtttgcagttattcatctggaggtgg
gactcctggagactttccatcatcaacattagaatatcacctgttgtcattgttgaggtc
ttgtttaaacaaccacatcgttgcaatttcatgcatctagcttccttgtcatatctagaa
aacacaatcttgcagctgttgccttggtcctctaagacttagaatctgttaactcttctg
ttgtgtttcctgagtcttaggcataggagttgtgttgtaggtgtatcatttgggctgggc
aacccacaggcagttttcttctgcatgtaagtagttggggctcccttaatggtctctgta
tcccataaaaaaaaagataaaaaagattctttgatgcagggtgaaaactacacttatttg
tgaatataaaaataagcttttagaatatcgttaaaaattatattggtttaggaaagtggt
agttgtaggttctcatctaaaatccatgtcttagggttactaatgcagcaagttagggac
aaaagtgttggtttggcttacacttccatatcgtccttcgttgttgaaggaaatgaggct
aagaactcaaacaggaaaagaaccagaagtaccaggcatgatttccctcctgttcagttt
gctttaactccagttagacaattgctggttaccactaaatgtaccactattacatctttc
agtgaaccttgcaggatttgtaatttataggtatcatggcattctcctgtccacagcttc
cactgtattttgcaacattatgaaagctagtccttagagaagaggatttagacttaaatc
ctattggaattctcaaactaatgtgtccacaaagttcatagtgttttcaaaaatctccaa
attctatttccagtttgcctgttctgaaactactcctctagttcaccaacttatgttcac
aaattatgccaagtgatataaagattgtcaattgactaatggggagaaattttagacaac
atgtgtgcctgctactccaggttcttagggtgtttgagtttgtgtccttacttctgcgta
gagtcactattttgtcctatttttgtgttgctatgaagtgtctaatgatgggaaccataa
agaaatgaggtttattttaattgtaatcctgtgactttaaagtccagactgcatggcaac
accatctgactgtgcacaacattgaaaagaagtggaaaaggagcttaccttacaccgaag
tgcacatacacagggagagaagcaagatactggaaagggaccaggctcagctttgaaaac
aacccattttctcaggaactaatccagtccccatgatctgatccaagagatagcaagagt
aactcactcataaaggttcaaccccatgatgaattactggtcactgggtttgtatctttt
caatcccacccaaccacaccacaggaatattctagcatataattctttaatgagcaattc
atagccaaactacagcacacattactccacaggtttcttccactttccacattacaaaag
acaactttcctaagacctaaaattttaatacattttcttatgtattaaaatttacaacag
agtgcaactagaaaataatgagactttctatgggggggggatgggactattttttatttt
tgatctccacagttctttagcttgtaagtattcttaaatataaaaaagaataagctatat
cagtaagtaagttaattctatatccagcaggaaaaaagtgtttcttctggctttgCTCTC
TCAGATCTTGCTCAG
Primer
(+)TTAAGCCCAAACATTCCTGA
(+)CTGAGCAAGATCTGAGAGAG


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