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Human element [ hs2080 ]


Position: chr11:35,808,002-35,810,908 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: TRIM44(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CACCACACAATGCACACCACTtacactactaccacctcattaacccaggagtaacagcta
ctgaggcctggcaagattcacagtcccacccagccttctttttagtgggaagaacatgag
ttttgcagccagtcactcctgagatccaaatgtggtcaagtcactgacccctctgaacct
cattttccacatctgtaaaacagagaatcataatgccttcttcacagagatgcagcccta
attggacaagagattataatgatacctattataatgcatactcattgaataaatttttta
aaaaacacagtaattttctcggtgttagcgaaaggtttcccaggcaccatgaagtgtttt
ggctgcagcaggagagtggttggcagatacagtgttcttcagtttccatttttcaggctc
atcctttagaaccaactttgctttttatgtcatgtttttccctccaaggtaggaggtggg
ctgacgctttcccttctgccctccccatcctatagctctctgtaagtattctttcgcctc
ccttttgtgatttccttaagtgcttttaatggttgcttgacactagaaagatattcccag
caggcactcagtttgtaatcactgcttgttgcttgatgtgaacttgtggctgacctctgg
gaaagcggtgtgggcgggcatggggacgagaggagggagcaaggctctgctccagcaaag
cgagatggtgcatccctgagcagctggctggcaactgaaggggtggctctgaagattgct
gtcacgcctccttgccaccttgggtcagccagcgtgtctggaagtataatcagtagtggg
ttatggtatggttaaacaaccatattcttaaacaccagcaaagcacaaaagaaaaacagg
atgatagagcagctacagtacatttccacagtgtctctgttattaccacaaggcgaatgg
aatgccctgaggagcagcatgcatacagctggaactaatcatcccttattccacagcctg
tgacctgggggcctagaatgtcccccactttttttttaatcctgtaattctgactgtctt
caccaaggaggtgattgaggtattgcaaatggaagaaaaatacaaattctttgtatcttc
cttttacaaatcttcttagacacatggctgctaatcagggctgtaagtgattaatctgga
tacttgccttcaagcagcagttccctgtctagaggaggaaaagccaagtgtctgtaccca
gttagtatcacaagagacacctgtggtagtgagtgtcaatgtcagggaaatggatttcat
gttaaatgccttgtgcccaatcttttgtgacccgcctgaaccttatgggcatatccccaa
accacactgtgagctaggacttcataatgaggcattcagtgtctaccactgttcacagcc
tcacttcctagcctttgtaatgaattaccctgtttatggacatggctcactttccaggct
gccactccccccttcctcaccagctttgatgccagcctatggcagttgttcatgcttatt
cccttgattaggctacttctaactcacctggtcttaccagcccttgggatcctgcatttc
tactgctcccccatgaacagtagagccaccaagttccccttggtcctacaagcaggaccc
caaattctctgagccggagggtggatgatgagtagtctctgtaggatggagtggtcagca
cagacttcatggaagacgtagacttaggctgcttatgatttgggtggggaaagagaaagg
atatggctattctaccctggagcaaaagagatctttgttatgacttgttaacagccattt
aaaccatgattgtgaaggaggagtttagaactggagctgccacagagattcaaggattat
ctgtggattttggtgttgtactgttctttaccaaagggaggggtaggggacataaggggt
tgttggaacaaaagaaagaaaataaagcctctagtatggcgttatatcagattcatggag
tccttctattctcttcctccagacaatttttatattcctgtgttgggcctcatttgagag
tctggttttggcctctaacaagaatgccccttgcagccatgttgtgaccattcatgccaa
ttaaaatgaataagaactaagtgatcgtcttgcctttcacacaaaccagtggttctcagc
gttggttgctggacccctacagttaatggctctatttccaaagcctggtctttccatcct
cttcagtgggcaaaaagaggcatgtgattagccaccagaggccttagtcccaccagggct
ctgagctgtatcagaaatcagactaaggagaggtggctggagaagcagtttgggaaggac
ataagctttctctttacagctgaacataaactaagttgttccacaggctttgcttaaact
tttacagacagaattatcactcttctttttaactccttttttctttcttgtgtatatttc
agcctgaggccctaaaaatagtttttttatagaggagtatctttattgtctcacagcaaa
tattttttaatttgaaaacaactctcaaaagaattctctcatcttttccccaaagtggtt
gactgaaaaatatttattttattgtcattcccctcctcctacctgtctctgctgggctga
gtgaagattgcagtggaatgttttaagtagtgagtgggtgagtggctagggaaagtaaaa
gacctatgcacctcatgctaacttctcatgttagggtagaagagccatctgatatattta
ttgttctatattaaacttgagtctgattgggactgagaatgtgagagccttagaaatcat
ctaatccAAGGAGGAAGAAGGGGACAC
Primer
(+)caccacacaatgcacaccact
(+)gtgtccccttcttcctcctt


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