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Mouse element [ mm2079 ]


Position: chr13:14,728,251-14,733,575 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGAGGTACCATCTGATGTCtgcctgcagaagagaccagatgtaggcaatagtgtgagtg
gagttggctggagtgggtggaattgagttgagggggggggcagtctaggctcctggggcc
aaggacttttggcagggatggatgttggggttccccagttgaaggtgtgtatgggcagct
attttaaaactttaatcttgatgtttggaatcttaaaattctcaatagttgaatagtaag
actaattattgatagaaatacaaaacacattgccaaaactcctgttttgttttgttttgt
ttttttcccgacataggacatgctgtggattccacagtttacagaggtgaaggtgtaaac
gagtgtcggaatccagcacactgcaggaggagctcaaatgtacagctttgcttagctgtc
agaaggaaggaggctctcccagaatcccatgccctgaagcccagggtcatatcctctatc
ttcacaaaacattgttgctagattggactttctaatcatcttaatagtggcaactactga
aatttgcctcgtttcttatctaaggaataatgctgtcagcatgtctgcatactccatgct
ctccgacagaattgtcatggccaaggaactgatcaaaagagcagaatcactttctcggtc
ccgaaaaggtggcatagaaggtggcgcaaagctgtgcagcaaactgaaggcagaactcaa
attcttgcagaaaatagaggctgggaaggtagctattaaagaatcccatttacagagcac
taatctaacacacctgaaagccatcgtggaatcggcagagaacctggaagaggttgtcag
tgttctgcgtgtcttcggctacacagacaccttgggagaaaagcagactctagtggtgga
cgttgtagcaaatggaggtcatacttgggtcaaagccatcggtcgaaaggctgaagcgct
gcataacatctggctgggcaggggccagtacggtgacaaaagcatcattgagcaggctga
agacttcctccaggccagtcgacagcaaccggtgcagtacagcaaccctcacattgtctt
tgcattttacaacagtgtctccagccccatggcagacaagctgaaagatatgggcatatc
tgtgagaggagacattgtagccgtcaactctctattaaatcaccccgaagagttccagct
gagcgagagtgagtcagatgacgagggccaagaacttctgcaggtgacaagagtcgacag
agacaatgtcctggcacgcgttgcctttccaacagagatcaaggtcgatgtgtgcaaaaa
agtcaacctggacattactactttaatcacctacgtgtctgccatgagttacggaggctg
ccactttgtcttcaaagaaaaagtgctcacagagcaagcagagcaagagaggaaggagcg
ggttctacctcaactggaagcatttatgaaggacaaggagttgtttgcctgtgaatctgc
tgtcaaggactttcagtctattctagataccttagggggaccgggagagagagagagggc
cgatgtgctaattaaacgaatcagtgtggtgccggaccagccttctgagcgtgccttgag
actagtggcaagttcaaaaattaatagccgttccttaacaatttttgggacaggagacac
cctgaaagccatcacaatgactgccaatagtggttttgtcagagctgccaacaatcaggg
tgttaaattcagtgtgttcattcatcagcctagagcacttactgagagcaaagaggcctt
cgccgtgcccttaccaaaagacctcaccgatgatagtgcgcactaatgctatcctttaag
tattgtcatggaaatacattatttatactaaaggctggccttcccatatatattgggaga
aaaaagtttataggaaacataatatttagacctgtttaagtagaagttctttgtgtttca
tctatttaaggtctataaattagaaaaaaaaaaaaaacccaattgacagtcttatgtatc
cctgcattccatcacagactacattgtagcaggtaagaacagaaagacatttgcataagg
cttttagctaccttgtgatgcatttgcctcagtagggctgcagcctccagtacaggtaat
cacatttcatggaacatggctacatgattcttgaattcattaaatatctggagaaaattc
tgaggcctgtttttcattgtgttatatttgtcagtctactaaaggtgagagatattagtt
atttcaaaccctaaaatcactgcttgttattaatggaaagaaagtcctaaaaacaagtaa
aactaaaactaatgctattaattttagaaattaaactaaagctaaaattcttacagaaaa
tagagaaaaatttttaaatttcaaaaatttaaaaacaattgctttgtgtcagacagagtc
tggtgggtattttatagagattagaattcatatggaacaaaagggaactttggtctgttg
ggtctcatttatttatcaatataccacttgtcttagctgggattacaggtgcagtaaggt
ggaaaggaaaagaggatctctttgtcttgcatatcctgagccacagttgattgagggaag
ccaaggcaggaactcaggttgtgtggaacccagaggcaggagctaaagcagaagccatgg
aagggggtgcagcttactggcttgttctttctggcttgttcagcctggtttcttttagac
tctaggaccaccagcccagcgatggcaccactcacaatggactgagtccttccccatcag
ctactactgaagtgctccacaggtgctgttgcccagtcctttggaggcattttctccatt
gaggttcccttctctcagatgatgttaggttgtgtcaagttgacataaaactagccagca
cagcactttgaaggagaaacagtgttcctaagctcagcctagaactctgaaggtaaacat
tagtttgaacaagtagaaaatgtagttttctaaaactcagattttacatttaagtccaaa
acaaaccattattacaagtatttgaattattaaaaactacctttcttattctgtaagccg
ctagcaagtgaaaattaatggcatcactcatgaaacggtgatggagatagtgaatgagag
ctgcatgcaattaaaggtaagttctacgactacagtgtactccataccttatcatttaca
agaaaacaaattcacaaagtgagtatatatttttctaaaagctgggaatttgagagttgc
cttgtctttcctaaggagttactattgggatttgagtattagcagcctgaaactctgcca
gctttgcttaagttacaaaaagggaaactcagttttaagcaacaactttgagatgaagtt
tggttgtcaggatctaggaacacaaaaatgaatgcaaaattaaatgtagagtggcgcttc
tcggggaagaggtcactaaacatatttcccacagggagagctgaattaggcttcaagttt
aatgtgggggaagtcttatctagttgtagaaatgaaatttccaaatatgagcagctattt
aaggcagtggctctcagcctttgggttgtgacttctttgaggtaggggttgaaccaccct
tccacgggggttgcctaagaagattagacacacagatttacaaaagtggcaaaattatac
ttatgaagtagcaatgaaaataatgttatggttggggctcaccacagcatgaactgtaat
aagggattgtagcattaggaggattgagaattactgattaagggtgttaaaatatttagt
gctatttagtaccaaacatgattagaatatttcgctatgaaacagcgggtaattatgagg
aacacttagtcccaatggaggtaaaaatcaaaatataatgtattaaattatattcaaaat
gctttgagtacacagtaagggagtaactcttgatctgggtcagaggtcaaaagggcttgt
tgctttcacgggtgaaaccttataaagtgtgtaagtgaaaacaagtgtgggcagagggca
tgaatttgcaggcctggtagcaaaccaggccagagaaatggaagtttttttaaaggtagt
caagatagacttaaggtcatatcagatctcttttaaggaagcaataactgtggtttgatg
aaatatgttttaaggaagatgtggcaataactgtggccagagtaagaatattgggacata
tagatgcatgttgtgttaatagcatcactgatgtattaatatcatttagtatcttttgag
ggtctgccatctgctacctggcacagaggagggctagactattaaaaaggcttgttttca
agaagggagcttgctgttgctgtcttctgggaaccagttcctaggaacttggactccttg
ccaactagaaagttaccaaccatggcattctgaagaaactgctgtctgaagtggctgtat
ccgtggccctaccaaacaccactgtctccaggcatccagaattacagttttaacaataaa
atagatgcaagaaatagatgtggttttttagtgaggcactgggtcctggaatgtaacaaa
ttgctctctctggaactgttctctgcagcctaccccatacaccaaaggcttacttaagtt
ggctgaagagatcaattcaaaggtaaaaaaaggatggcaattgcaacaggaatgtccagt
taagtagccagttaaaaactgtcaagacatgttagaaagtaaagcaaatgtctaaagcat
tgtgaaggtgaagataaacaaaaataacccacagttgtactgggcaaggtggtagtgttg
ccaagatcctggaacaagcactcagtgagcggtggtaaattggatgccggatccaggttg
tattttcattttatactctaaatcagtgcttctcaaccttcctgacgctgtcacccttta
atacattttcttaggttgtggtgacccccagccataaaattgtcttcgttgctacttcat
aactgtaatttaggtgatttaacagttatgaattgtaatataaatatctgatatgcagga
tatcagatataaactattgtggatagccctggtgctgtttgtattttgatgctaattctg
cttccccaagaggggctgcctgggactgggagtgaatcaggtgcctcttacttcactctc
tgtgaaccttctcataatgaatgaagatttctaggaacctatcactggtcgaggagtagg
cggacttacgggtcagagaggggagGAGGAGAGGCAGAAAGAAGT
Primer
(+)TGGAGGTACCATCTGATGTC
(+)ACTTCTTTCTGCCTCTCCTC


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