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Mouse element [ mm2078 ]


Position: chr13:14,733,096-14,738,333 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AAGGTGGTAGTGTTGCCAAGatcctggaacaagcactcagtgagcggtggtaaattggat
gccggatccaggttgtattttcattttatactctaaatcagtgcttctcaaccttcctga
cgctgtcaccctttaatacattttcttaggttgtggtgacccccagccataaaattgtct
tcgttgctacttcataactgtaatttaggtgatttaacagttatgaattgtaatataaat
atctgatatgcaggatatcagatataaactattgtggatagccctggtgctgtttgtatt
ttgatgctaattctgcttccccaagaggggctgcctgggactgggagtgaatcaggtgcc
tcttacttcactctctgtgaaccttctcataatgaatgaagatttctaggaacctatcac
tggtcgaggagtaggcggacttacgggtcagagaggggaggaggagaggcagaaagaagt
gtcttgcttttggacagggaaagcttggaggacaatatgtagctaacaagaggccccccc
gaatttgatggcagatccgccagaatctcctctgctctacaggaggagttaagcttagaa
cgacttgtaaattaggatgctagttgctgagtccagtgattgaattacctgttaattctg
aactgagtttgtgttgtgttttacttcatgtggtgcctcaactgggttccagagagaaag
gtgctgtggcaaagcatgggtttgcaccccaaaaggccatgggaatttggaagcgtggga
ctggcgtggtagcaacctgccagtgggaacttagcaagctgggctgggagatttcggagt
tccgggtccgggtcagagagtctccaaaagaacaggccagtgccttgcctgcgctagcat
ggattgcttttgggtttgttcaaccctcaaaggagtcatgacccacaagttgagaattgc
tgttctaaaagcaaaaggcacagtggcagtcagcgggttgtgaagaacagtgacacgttg
tttcagctgtttctctaggtcattctgatgtaggtaacaaagtcatgcttagcaaatagg
cagtgctttaagtaaatcactaaatcaatcaatcactgtctaataattgatcttttctac
cttggtcttcagtaggcaaaagtaaaagtatgtttagaaaagcacattctctgaaaagat
aacctaaaaatattttggaaaactaaagcaacttagttttaagtattaagaaatgtaact
tgaggctgacgagtgggaattggggggtcagcaggtaaaagtgttagctgtgcatgcctg
atacagtttgatctaagaacctacataagccagaggctgctgtacatgcctctaattaca
gcctttctacagaaagatgagagggagacgggaaaatcacagaagctcacaggctactaa
gcttggagaacagctcagtaacaggcaataggagacccattgactcaacgaggtaggagg
tgataactcattcctatgaccactacacttgcacagtgacatgtttttacgcacacacac
acatacacaattaaacaaacaaacaaacaaacaaacaaacaaacaaagtgtgggcagtgg
tggctcatgtctttaatcccagaggcattgaattacttgggaggcagaggcaggtggatt
tctgagtttgaggccagtctggtctacagagtgagttccaggacagccagggctacacag
agaaaccctgtctcagggggtggggtgtaaacatataagtgtaacccctacagtaaatga
agaagaaactaattccaaatgaggtatgaggaaagagaataatgtagtacacataggaaa
aagtcaaaagaattccttaagatgcctacagaccaaagagcaagaggaaagagattctta
ctgtgagacctacagagaagattaatgctgggtgaatacactattttagtattgaacagg
actattctccaagccaaatcactgccatcaagagttctcatcccagctaggcttcatgat
tgctgatgttttctcataggaggaaggagcaagataggtcatgggactctcacccgagta
tccatccacacctcccagccagttgtgtgcaattcatgcatgccctgattgaatctagtc
ttggagtctctgagagagactgggggaggggactttctctatacagccataaggaaggca
tcattcttggtgggtacaggccttctaacgttgctgctttaagatcatccaaagccactg
cccatcactcctcactcattgctctgtgagtaagtaagcctaatgaactcattggttttc
caacgtaaactgtggtagaatctgagttaagtttgtcattggaaccttggtgtgtgtgtc
tgtgtctgtgtgtaggggataaggggcatctttttagtcttcctcaaagtgaaaactctt
gaagcatattaaaacatgattttcttaggaatatgaattagaatcaaggaagaaatataa
aaccaaaagaaataactgaaatcatttttaaagtagctaagcacttttccccccaaatga
cctggtttagttagcttcatcaagtaagttttaagttttaaatatcaagtgagttctgtt
ttaaaagtgatatggtgcacatctttttgtttgtttgtttttgtttttgttttttgtttg
ctttttttcaatttttattagatattttcttcctttacatttcaaatgctatcccaaaag
tcccctaatccctccccccactctgttcccctacccacccactcccacttcttggtcctg
gtgttcccctgtactggggcatataagtttgtaagaccaaggggtctctcttcccaatga
tggctgactaggccatcttctgctacatatgcagctagagacacgagctctgggggggta
ctgattagttcatattgttgttccacctatagggttgcagacccctttagttccttgggt
actttctctagctcctccattgggggccccgtgttccatcgactagataactgtgagcat
ccacttctgtatttgccaggcactggcatagcctcacaagacacagctttttcagggtcc
tttcagcaaaatcttgctggtatatgcaatagtgtctgcgtttggtggctgattatggga
tggatgaggctacagtagctaatatagagagaagaggatcttgagaggcacctgtgctgc
ttctctgagcatcactgtactgggaatgttttcagatttattttccagaatatgaacata
ggttttatacctaactctgggaacatagtataaaacaaaatgtaacacactatcatttga
tgatataaatctcagaataaaaaaaaaaaaaaaacttcaccaggagaaatcttgttccca
ggagaaaaatagggcagagtatccatccttaacaattggctaatcctaacaatcagaatt
ggccttcatcatgagatagaataagagtaggcttgtttatgcggaaaatcccatataggg
aacaaaggaaattctgagtgtgtggattcctgagtagctgtgtgttgttgacttggccac
agccttttcaggaccctggcctcagtcctccccacttagaggcacaagtgtggatgctga
tagtgtggtcagaaaatgtccaacatggctcccctctgtcaatatttacaacctgaagac
tgttcccatacagaaactgctcctatggagattagctaaacctgtccccttgttccagat
gaccactgtaaaccctgcctccttgttttttgttttgttttgttgttgtttaatttattt
tttacactccagattttattcctctcccatccaccctctgactgtcccacatcccataac
tcctcctcacccccatatctccataaggattctcccccaaccctacaactgacatctaaa
ctccctggggtctccagtctcttgagggttaggtacattatcttttattgaacacagacc
aggcagtcctctgctgtatatatgttgggggcctcatatcagctaggctaatgttacctg
tttggtggtccagtgtttgagagatcttggagatccagattaattgagattgctggtcct
cctacagggttgccctgctcctcagcttccttcaaccacagagttcagcagcttctgtcc
attgcttgggtgcaaatatctgcatctgactctttcagctgcttgttgggtcttccagag
tgcagtcatgatagatccctttgtgtgagtgctccatagcctcagtagtagtgtcaggac
ttgggacctcctcgtgagctgtatcccactttgggcctgtcgatggaccttcttttcctc
agactcctctccatttccatccctgcagcaatttcagacagaaataattatgggtcagag
tattgactaggatggcaaccccatccctcacttgatgtcctgtcttcctgcttggtgtgg
gctttgtaagttccctctccctactgtcaggcatttcatctaagtcttttgagtcctgag
agtctctcacctcccaggtctctggtgcagtctggatggtcctcccaaccttctacctct
caaggttgcctgtatccattctttctgctggccctcacccaatactagattaggttcccc
tctcctcccccactccccatccacttcccctcccaagtccctctctctatccccacttgt
aattggtttcttctccctcccaagtggggctgtgggacccttcagcttgttgaccttttt
gagttctgtggactctatcttaggtattctgtactttttttgttgttgttgttctttttg
gctaatatccacttattagtgagtacataccatgcatgttcttttgggtctgagttacct
aattcaggatgatattttctagttccattcatttgcctgtaaaactaagggtgtcctcat
tctttttttttttttaaattggatattttctttatttacatttcaaatattattcctttt
ccagtttccccccctcttgggaacccccatcaaatcacccctcctcctgcttcaatgagg
gtatttctctacccacacacccactcttgcctcccccaccctcaattctcccatactggg
gcatctatcaagacttcataggaccaaggacctctcctcccattgatgcctgaaaagtCC
ATGCTCTGCTGTATATGC
Primer
(+)AAGGTGGTAGTGTTGCCAAG
(+)GCATATACAGCAGAGCATGG


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