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Mouse element [ mm2077 ]


Position: chr13:14,747,610-14,752,861 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGGTATAGTTTCCTGCCTTgtgttggagttttctatctattatcccttatagtgatata
tttgtggaaagatattgtttaaatttggtcttgtcacagaatatcttggtttctccatct
atggtaattgagagttttgctgcttatagtagtctgggctgacatttttatctcttaggg
tgtgtatgatatctacccaggatctcttagggttgctgttgagaagtctggtgtaattct
ggtaggtttatccttatgttacttgatccttatcactttcaatatttttttctttgtttt
gggcatttggcattttggttattatgtgatgggaggaatttcttttctggtccattctat
ttggagttctgtaggcttcttgtatgtttattggcatctttttctttaggttaggtaagt
ttatccttaattttattgaagatgtttactgcccctttgagttgggaatctccactcttt
tgtatacctattattcttatgtttggccttttcattgtgttctggattttctggatgttt
tgggttaagagctttttgcttttttacattttctttgactgttgtgtcaatgtcttctat
gttttcttctacatctgagattttgtgttggagacaccgcacattaagcttgagatgcct
ggtacccctgatgacaaggaagaaaatcctgccaggggtactgtgattcagagcacaaga
caatggtctcttgtgggccccagtatgagtactgtgaggccccagggtctgcttctttgg
tgcaagcaattcataatgtcatttccacaattattcttagtacttactattttctttatt
tactattctctttctttctttctttctttcttccttccttgattaaaccaatatttagtg
acctggcaaggtctagtaggagcccacttgatatccagaaattagatgttaccaataata
ttaaagtgaaggccattcatgaattcaagagaaatgtatgttatagtcaatcactctagg
tagaaatgatagtaacctagagcttcaggcagagatgaataattctgcagctgttcccac
actcttagtctcaatcctgtgtaataaaaataggacatttttattataaaattgaggatg
gaataatatatagatatttcccagaaagttagcaatgggttccttgcatttagggacgat
ggtggctgccccctaggaattttccatacaggttagatgagggtgttttttagataggca
gatggggtctaaaaattataaagactgcagggtttagtttcctttttttctgttctaaat
ctgtattactctgtgtcacaataaaatgttggcacaggaaaatagagacgcacttaccca
cccccttatgaattttgtaactcaatttccttgtatgatttcaataaaagactgggtgtg
agtcaagtctagatgagcacgctgactcgtgagttcaagagctcacatgccaatacacca
gactgtcatcattgtatctcaattgtgtgttttcttatttgcctaccaattttccctagt
ccttgaagacccctgactcttgttgaggctggatcccagcaattttctattctatctctt
gtattctgttggtgatgcttatatctatgatttctgatttttttcctaggttttctatct
ctacagttgtctccctttgttatttcttttttgattctatttccatttctagatcctaga
tgttttagttcaattccttcacttatttcattgtattttcctgcatttctttaagggatt
tatgcatttcctctttaaaggcactcagtaaacacctgtttacttgtgttctccctattt
ctttaagagggttattttttccttcctaaagtcctctattgtgatcatgagatgtgattt
tagaccagaatcttgctttttatggggtatccagggtttactgtggttggagaactgggt
tctgatgatgccaagtagccttggcttctgttgcttatgttcttatgcttgcctcttgat
atctgtttatctctggtgtttgctggacttgctgtctcaaactggaacttgtccctcctg
tgagactgggagcctgggagggtcagcagtcctggggttcaagctgttagcttgggtgtg
tcaatagtcctgggggacaagcttcccctgggcaggattggggtatggagggctgtagca
taccccaatgcactcagctcccatgcaatgatgaaaactagattgtgttcttggctgcac
tgaggttcttttgtccactggaccccaggcaggtccaactttgaccagttattagggcgg
tagtggtggtctcacctgtgatcttgggtgtgtcaacacttttggaggacaagctttctc
tgggtgggcttggggtgtggagggctgttgtacagggtcagctcctgggcacagatcaaa
actggaagtattgtgttcctggccgtatggaggttcatgtgtccactgggctggataact
ttaaactttaatatatactatatattatataatataacctgttattcacatatgtaatgt
actgtatgtaaatatattatatattatattatatattatatattatatattatatattat
atataaaatcacattatatatgataaatatggaaacttttacagtagtaggctgcacatg
gatatttcaaaaagtctttatttttttttaatcccacaatccttctcttgccctctttta
ttgcctctaccatttaattcttcctgattatgtccaactatgtgggactatgaaaggcag
tctgttttctggttgagctaggtttaaaccccagagacccggcaggtgttcctgcaagaa
atggaaggtgtttgccatgccccaagacatcaggctcctgacacaagtccttcactctcc
ataattctgtgaccatcactcacatagggcaataccctaagcccctggtattctgtctgg
actctaccctcacagttacctggcagcagccaggtaggcccagcccactattaaaggggc
tgcttgccccctcctccctctcttactcttgcctctctctcttgctgtcttgctccccct
ctctccacattcctttcccccatctctccatgtggccatggccagcctctacttctctac
tttcttcctctctctgcctttctctgcctctactaacctcctagctccccttcccagaca
ctccaccagcaaaaggtatttaacctcaggcccaccttgagaatgtggggtaaggtttca
ctcatcacatctctgccatgacaataaattccttaaaaccatggactccttcttctcatt
gggactcactgtggggaacaatggagcaggtcttcctccaaagagccacatgtctaatct
cccacaggaggcctctctgtgttctcagccatggtctccaccaagccaagctgcccaagc
aagccaaagactttccttcctgagggaaccagctggagctctccttcccctcttttccct
ttggcccagtaacacccccttgctaatgtggtcacaccttcccaagctctgccacttact
ggggaccatgcattcgaacatgagcacatggaggccttctaatttaaactacacaacatt
tatgccatcctcaccagtgtctgcaaattgaaatctaaatttgtattgccctgatagcaa
agagaacatttccccccttttttctttctttctttctttctttctttctttctttctttc
tttctttctttctttctttctttccttccttccttccttccttccttccttccttccttc
cttctttctttcttccttcctttctttctttctttttttaaatttaggtattttcttcat
ttacatttccagtgctagcccaaaagttccccataccctcccacgccactcccctaccca
cccactcccacttcttggacctggcgttcccctatactgaggcatataaagtttgcacga
ccaatgggcctctctttccactgatggccaactaggccatcttctgatacatatgcagct
agagacataagctccgtggatccatcccataatcagcctccaaacgctgacactattgca
tacactagcaagattttgctgaaaggaccctgatatagctgtctcttgtgagactatgtc
ggggcctagcaaacacagaagtggatactcacagttagctattagatggatcacagggcc
cccaatggaggagctagagaaagtaaccaaggagctaaagggatctgcaacaatatgaac
taaccaaagagaacattttaaaagcactttttttagccactgtgtttcatattttgagaa
ctctcaacttagtcccatagcccatttttcaatttatatttttttcttagtgtattgttt
gtttgtttgattactttatatattctatatgccaactctctgtcatatgtttgactggta
aatcttttttccattatagatgctgcctatttactcaaacaatatattctttgttgtaca
gaagctttgaattttacaggttcgtgcagttccccattcagaaagcccttttgttgctta
taagttcaagtgtattcaataatttatccttcatcagattcagcatatattctgttttat
ggtgaggttcttgatccatttaggatttttttttccaggatgttggacatggattcagtt
tcattctttgacttgtacatatctagttagaccagcgccatttgtcaaaaattctgtact
ttctcaaatgtgtatttgttgacctctttgtgtgagtaggtatggacttatgtctgaatc
ttcaaatctatttcattgttcagtgattgtgctttgtggcgctaccatgttgttttatta
ctttagctctgtgttataatttaaaatcatgaatgaggatgtctcattccagcagtgatt
ttattgctattaggtgtcttgctgattttgtgttttcttatgaaatttaagattattttt
tcaatttccatgaagaattgcactggaattttggtaaggatttcactgaatatttagatg
ggtttagatagaatggacattttcccagtatgatttatgttcatagactgatgtcaatgt
ctcacttggggttagattccccgtgatctgttgatctctgtgttgtgtctactcgtagtt
ttctgtgatcttCTCCATTTGCTGTGAAGAGA
Primer
(+)TGGGTATAGTTTCCTGCCTT
(+)TCTCTTCACAGCAAATGGAG


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