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Mouse element [ mm2076 ]


Position: chr13:14,752,486-14,757,814 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGTTCAGTGATTGTGCTTTGtggcgctaccatgttgttttattactttagctctgtgtta
taatttaaaatcatgaatgaggatgtctcattccagcagtgattttattgctattaggtg
tcttgctgattttgtgttttcttatgaaatttaagattattttttcaatttccatgaaga
attgcactggaattttggtaaggatttcactgaatatttagatgggtttagatagaatgg
acattttcccagtatgatttatgttcatagactgatgtcaatgtctcacttggggttaga
ttccccgtgatctgttgatctctgtgttgtgtctactcgtagttttctgtgatcttctcc
atttgctgtgaagagagggttctttgactagatgttgtgatttccactacctgtgggtat
aagggtaatataaatttagaatatagtgaggaattatgctagtcgaacaattggcagtag
tagattcttttctagggatcgtgactaaactagacccaggaggctggtgaggtttccagc
accaagaatgatttcccttctgttgaatgggccttccatccaattagacagctgttggtt
gcctccaacacatgagtgccacttcttacatctttatgtttattttgctatgctgatgat
tgttgtagttcatggggttttgctgctgcatgggacagcttagttgtttccctctcttta
cagcttgcattagtactttttggaacaatgaaagctagatcacaggaaaaaaagcttcca
tgtcaagtgtgacccaagtcatctgagtcctgtgtcctaagtgtcttcaaccaaacgcag
ctcactttcaacctgaaagacaaccaagggctacatcaataatctgtagtttggggaatc
acttggactatactgaccaactatttgaaagacagttacttgaacctggtgctgagttcc
ttttgttaattaaatgtttcttgttgggagcactgtcagtcccaatggcttatattccat
tcacctctgtactgatcagtttccctcctatctaggtggagcctcttctccattactcct
tttgtcacttcatatcatctgtatcttgctatttccctctctattccccttccctggttc
ctttatatttttctggtttctgtagttacttcatgatccgagggtttggatctaggaaat
gaagttgagaaagaacatgcagtgtttatctttctgataaacactgataaattatatcat
tcgatataattgttttcaattcattgacctgaaaatttaatgagttcacttttccttatg
cctaaatactattccatgtgtatatataccacattttcattagtcatttgtttgttgaag
gacctttagattgtatgatcgccatcaacattgctgagcaagtatctgagcatatgccaa
tcagtaatacaactgggacatatggtagatttatttttaggtttttgagtatcctccata
cttatttgtagcattactacaacaatttacattcccaccaatactgagaacctggacaga
agtggttttctattgttttgttaattttagccattctgaatgggatgagattaagaaaat
atcaaaattgttttaattttcatttctctaattgctaaaggtgaacactttctgagacat
ttctcggccatttttatttcttttgagaacttggtttagattccataatccatttgtatg
aagagtaacaaaaagccttagcagtagcctgtgatgtttgagggggcccatggggcccct
ttggtgaacaatttaataagaatggtgagtttggctacactgctctggctcttggagggt
catacacacacacttgcccagaagctttctggatttgtgaatggaaaacatacatacacg
cacacacacacacacacacacacacacacacacacacacaccagttaactttaaaatgcc
ttggctggttcaaagactgggcagttttaatcctctgcctgctaccccaggcccaactgg
ggaagtggccaatggccactcactagaaatctcacatggttggttggctctatctcctac
agctcctatgtctatccatatctcaccaattcatagcaattttcctcctcttcccccctg
ggtcctagccaggtcaactctaagggtcctgccctgtctccctttgcccagctattgtct
actggcttctttattgatcaataaaaaaccaattggggacaaggacctttagtgtttgga
cacaaagatttctgattgaatcaaagcattggaaccaatctccaacactatctagcctca
gattcttggttactttattagtgtcaggcatgggttccatttcatggagtgagactttaa
tccaataaaagcacggttggttactcttgtaccatgaactctagtcacttgggatgaagc
ttctagttaggaatgagctctatttctctgtgtttgatgacataagcaagttgtatctat
aacaattaaggccttaccatcagtttgtggagagtaacaaaaagctttagcaatagcctg
tgttgttttgagggggtccatgggactcctttggtgaacaacttagtaagattcctggaa
ctataggtttgtttcatatatgtattttagtttttaaattattattattttattggttat
tttgtttatttgcactacaaatgttatcctccctccaaatgtctccccccaaaacacccc
actatacttcgcttcctccttcctccacgagggtgcttccccacctacccactcggcccc
accaccttatcattcccctatgaggggcatcaagccttcacagggacccagggcttcccc
tcccattgacaagaccattcctgccacatatacagctagaatcataggtccatccgtgtg
tattctttggttggtgttttagtccctggaacctctgggaagtctgtttggttaatattg
ttgttcctcccatggggtgtattttaggaagcttctgtggtagtaggtttcccaaatgtc
ctttagtgttaatgtccctccttatatttccttctttactcttttttcccaccaccttag
agcaaaaagatggggaaaaagtattctagacaaatcaaattaagaaacaagcagatgtag
ctattttgatatctgacaaaatagacctcaaaccaaagctaatcagaagataaaaagtac
actatacttattaaggaaaaataccaaacaacaggatatataatcttaaaaatacatata
cccaagctagaagcattttcatgaaagaaacatgatcagatttaaaaccacagacaatgt
gtgattttaatacctgattttaaccaatagacagtttatctagaaaaactaaacaaaact
gtgtagttaaacccacatgaacctaagattttatgtgtgtgtgtatattatatatattat
atatacacatatattatatatatatatatattcatgtataaagccacacccaaactctat
agaattcttctaagaagtccatgaaacaattttcacaaaagaccacaatttgggcacaaa
acaagcctcaaaaatataagcaacttgaagtcacattctacattctgtacactgtggatt
acaggtagacatcaacaataactgtaaaaatgacagaaagctcacaaatttatagatgta
aactatatactactgaatcaaaattgggtgaaagaaggaatcaagaaaataattttaaat
gctttgagttgaatgaaaataacacacatcataccaaaaatctatgtcatacagtgaaga
catatagctccatgtgtccacatagaaaaaccagagacatgtcaaattaatcacttaaaa
tgtaccagaagaccttagaaaaacaatcagtgacaaacaatacacatgagtcagtaattt
aaattaaataaatattgaaatgaataaactagaaaggaaaaacaatacaaagaatcaagg
aaaccaatagatagtattttgagaagattaacacgattaacagacctgtaaccaaagtaa
tttagagaccattcaaattaatgaaaaaagagacattgcaacagatacagaaaaacattt
taaaaaagtgctcttcattttccagatgaaattttctatatctatctaaaatatacaaat
gctgttatttttttgtttgtgtgggactagaggtttttttcacctttccttcatccatga
gaaaaactgtgaaacagtcttcaaaatcacccctttgcagctagtattgccttaggctta
ttgttgaatccctgtagggataatttagtgatttggatccacagcctatgcttggtctgg
aaaggagcaaaattgctaagaaacactgtacttggaggacataggccagaagcatggtct
atgtgcatattgttcatgtctgtgtttgtatgggtggcatgctggggacatttctgcaga
gcaagaatctctatcaccacagctaccactgggctctaaatagcttttgggcacagtgaa
tcagtaaagagtgtaatgagtcacattatgaaaggtccatagagtttctttaagtggcat
ctttctaggaacttgtttgcagatcattaaatagttaattgagggagaatgcaaaataac
ttgtgtttcagtccactggcctctaaatggaaaccattacataacaaagcaaatcagaag
ttacactgatctatgtctgatattgaatatttacatttggtgtggcagagctaaatgtat
aaagtcaggcagttcccaggcattcataactgtagaattatatcccccggggacttgcac
ctgctatgatacctgtacagtgcatttcagggaacacagccgtctcctggttggttgatc
ttaacagtatgatttctcatttcacagctctgagggtgggactagaatgcctttattttc
tcaagtggtgttggcttctgaaccatatttaagtggtgagagtctagagactcttttcaa
aggcccataagagactttcttgtgttaggggcattgtttcctcaggcagagaacagtcct
gagcctttagaatcactcactctaatgatctgaatgcttttggcctgatagctaaccata
taacataaatcttacatcccaggaagttattgtgcttactataaagtgctcatgatctcc
ttcaaacgtcattttcttgttattacttcaactcatggtgttaaatgtatttgttcacag
agttaaacaaagagcctctgtgaatagatTTGAGCCCGTGTACTTGATT
Primer
(+)TGTTCAGTGATTGTGCTTTG
(+)AATCAAGTACACGGGCTCAA


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