Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2073 ]


Position: chr13:14,766,873-14,772,179 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGAAACAGCAAGACAGTATcggcgggagccatgtcttgctttaacctggtttatctggc
tcctgctgtatgggcagaggcacctggtttgtttccccacagctggagcaaactgtgtgt
tgattgtctttctctgtgttcttggacctggatgcccacttgtggcagggtctgtgtgtt
gattgtttttctctgtatttgttggtatctcattctgtgttcttgtactttgatgacaga
ttttggacattggacaaactgaaagacaagttaataactctatgcttctctgcatgaccc
actcctagggacttttgacttgcaggtgatcaaagcagtacacgagagagtatttagatc
aggagccttcaggcacccggaccaagggcccagtatagttacctaggagaatctattgga
ggacccctgttctccctcatagataaaagactttctttcccaagacccaccacacaggtt
ctgacaggaagaaggaagggtaggaggaggtatctggacctgagaaacttttcatcctcc
aagacccttcaacactgcatctgttactccaagacactcctcttccaaatctctctacac
ttcctccaatggctccaccagtgcccgtacaggttctggatccttagcccatacaagact
ggggccattttcctcccctttactggagggaggagggggaggagacctgagatccacctc
ccctgataccacagtgactctcccactaagggcacatgggcctctgaaaaagggcagtca
cgctatgtaatattggacttctctttgtctgacttgtacaactggaaggatcaactgcca
ccccatttttcccaaagggctggttaatctctttgagactgttttatttataatgcagga
agccagaatccagaatccagaaagaatacccccttagacatgggagcaccatcaattgac
caggctgttgtagacagcaggcttcctctgactagatctgatatggcaaaaggtaagggg
cacctgaaggtctaccaccagactccactggcaggtctcaagggggctacatgatgaccc
acaaatttgaccaagatttgtgaggttaagcagagacccatagcctttctagagcagctc
atggaggcattccaccaatatacaccctatgatcccagcagcaaagaacataacactact
gtgacaatggcttttatagaccaggctagtagagatatcaggaaaaggcttcagaggcta
gaaagacaggataagccattgagggatttagtgcaggttgctgagaaagtctaccattcc
agggagacagaggaggagaaggtgcagagaaagaggaagaaagaaaagtgacagggaagg
aatctatagagagtccaggctacagtagctacagtagctagggaaagcagagaagagata
ctccaaccaaagagtatcagaaaaccccttgaaaaggatcagtgggcatactgcaaggag
agaggccactgggctcgagagtgccctaacaaatggaaactgggatgaggaagtcccagg
ccttgggaaaagcacccccaaaagacaaaggataaagccctgggtaaagatattgattag
cggagagaggattaggacccctattcccaaacccacagtaactctgagagtaggggggat
acccattcaattcttggtggacacaggggctcaacacttggtcctccaagccaatggctc
catttccaagaaaagatcttgggtccaagaagctactggcaccaaaatgtattcatggac
tatgcgaagaacaggggacctaaagatgggccgggtatcccattcatttagggtcacccc
agactgtccctacactctgttgggatgagacatactctccaaaatgggggccctgataca
cttcctgctgatccaaaaagaaagacccctgatgaaagctgaggctacctggtttacaga
caggagcatgagtctcctcatgctcagagacaagcaggtgctgctgtggtgaatggcaca
aatgtcatctgggcagaacctctaccccctggcacctctacccctggcacatcagtggag
aaagtggagctagttgcccttaccaaggccttggaacttggagccagcaagaaaattaac
atccacacagatagcaggtatgcctttgccacaacccatgtccacaggactatatgccaa
gagaaaagactgttcacataagaggaaataaacaggaaatcttgggccacatgaatgccc
taatgaagccagcaactgtgagtattattcactgcccaggacatcagaagagactcaatg
gcctgggacaataaccagacagatcaagtagctctgcaggaacctatcctggttatgggc
ctgcaagaaatacctgctgggaaatggggctggacttggggatggcttcacttaaaaata
tatagaagaagaaatgactcaggttgctagccactctaccatctattactaagagaagga
aggacaatgctacacacaagggagaaatatactccccagaaagcaagcaaaagacttact
aggctaaatgcacagatagactcatttaggggataaaaggcttgtccaagcagttaaggg
tacacacacacacacacacacacacacacacacacacacacacacatatatatatatata
tatatatatatatatacatatattcatattctcaggttctgagccagaaagatgatagaa
cagtgtaaggtataccagcaagtacatacttatgcagccaagagtaaaaagggcaaaaga
actagtggaaaacagcctgtaggtaggttgattttatagaagttaagccaggaaaatatg
gttacagatacctactagtgtttgtagatgctttctctggatgggtcaagacattcccca
ccaagcaagaaacagctactgtggtagctaagaagatattagaagaaatttttccatagg
ttctgagtgcccaaagtaattggattggacaatggtcctgcttttgtctcttaaggtaag
ttagggattggcagagatattggtgactaattggaagccccattgtgttactatccagag
agctcagggcaggtagagaaaataaacagaaccctataagagatcttgactaaatggacc
ttggagactggcttggactggttgatgcccctccccttggccctgaacaccctctatcat
tttaacctgaccccttttgagatcctgaatgggacacccactcccttgaccccagctctt
gatcactccaagagtgacttttcaggctgacaaggatttatggctcgattgcaagctttc
cagatcagccacctgtaattgtggcctaaacttagtgtcctgtataacgtaggtacccca
gaggttccacacaagtaccaagttggagattgggtatatgttaagagacattgtgctgaa
tccttggaagcaaaatgaagagggctattcctggtattgttgaccatcccaatgtccatt
aaggtgaatggagtaactgcctgggttcacttcagatcagcacttgtgcctgatgccaac
taggtagcagccagacaccaaagcaacccccttcagcaaggtcagagaaaccatgagacg
gctatggtgtatcctctggtgctgacccttggcagctcccacaaccctaccagggtgact
tggcagttgctctcagccactggtaatgtggcttagtccactatctgcattgtgtcttgt
ggctagaccctgtctttggtctctgtgatttagtgatgggccttgacttctggggtgttg
ttgcactggagaaacagagggagggattgcctgaatgtgggggatgagggacttgtaaat
ctaaattgtgtcccggaagtggccttggagggagggacttagggtgcagacagtgtcctg
caaaaacccccatatatatgtgtctctgagatgggagaagccagtagcaggcccatcagt
gttagggggccaaccatttcttctatgatacctgggggtgtgaaacatagagaagcacat
actggagaccattctaggtgtagttaaagattcaatggccaaggtgagagaagggttagc
caagaggaagggagagagaatagagtcagggcagggctgattcaagtcttggtttaactc
cttgtcttggttaaccaccttcatatgcacattgttaggacccctaatagttctcctgct
attgttgacttttggcccctacattttgaactgcttgattgcatttgttaaggagtgcat
aggtacagtacaactaatgatcttaaagcagaagatacaaagaactagatacggaagact
aggaatatgaggtatcagaatactagcaatagcttcaggattgaatcttgcacaaagaaa
aggggggaatgaagagaaattccaccagactccttctctcctggaagagacaggtcagag
agcatgtaggccagaagggagaggctaagtaagcccctactacctcattccctaaagacc
aatcagtttaaagggtccactgttctgccaatcatattgtgcctagatgctaatgctatg
tttggcccctggaaaacataaaaactcacagagcaggctgctgggtgtgtgtgtgtgtgt
gtgtgttgcgcttctctttcgtgtctaggatgaccccagaacaataaatccctcttgctt
tttgcattgattcatggctccatgtggttcactcaggaagtccctggtaagctaaggctc
accagagacttagaaggtaaagtaacatataaaggcagacctatcagaattatgccagac
ttctcaccagatattatgaaagctagaagattctaggcagatgccatacagacagaccat
aagagaacacaaatgacagcctagcaaaactctcaattactctagatgaagaaaccaaga
tattctgggacaaaaccaaatttacacaatatctttccacaaatccagccctacaaagga
taataggtggaaaacttcaacacaaggagggaaactacaccctagaaaaggcaagaaagt
aatctttcaacaaacccaaaagaagttagccacacaaaaacaattccacctctaacaaca
aaaataacaagaagcaacaatcactactctgtaatatctctttacatcaatagactaaat
tctccaataaaaagacatagactaacagactggatacataaacaggacccagtattttgc
tacatacAGGAAATGCACATCAGTGAC
Primer
(+)TGGAAACAGCAAGACAGTAT
(+)GTCACTGATGTGCATTTCCT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.