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Mouse element [ mm2072 ]


Position: chr13:14,771,925-14,777,237 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
AACTTCAACACAAGGAGGGAaactacaccctagaaaaggcaagaaagtaatctttcaaca
aacccaaaagaagttagccacacaaaaacaattccacctctaacaacaaaaataacaaga
agcaacaatcactactctgtaatatctctttacatcaatagactaaattctccaataaaa
agacatagactaacagactggatacataaacaggacccagtattttgctacatacaggaa
atgcacatcagtgacaaagacagacgctacctcagagtaaagggctggaaaaaaattttc
caagcaaatggtcccaagaaacaagctggagtacccagtataatattgaataaatttgac
tttcaactaaaagctatcaaaaaagataaggaaggacacttcatactcatcaaaggaaaa
atcctccaagatgaactctcaattctgaatttctatgctccaaatgcaaggacgcccaca
ttcataaaagaaactttggtaatgctcaaagcacacattgcacctcacacaataagagag
acttcaacaccacattctcatcaatgggcaaatcatggaaacagaaactaaacagagaca
cagtgaaactaacataagtcaagaaaccaaatggctttaacctatagaacatttcatcct
aaaacaaaagaatataccttcttctcagcacctcatggtaccttctccaaaattgaccat
aaaatttttcacaaaacaggcctcaacagatacaagaagactgaaataatcccattcatc
ctatcagatcaccacagactaaggctggtctccaataacaacaaaaacaatggaaagccc
acattatacatgtaagctgaagaacacgctactcaatgataccttggtcaaggaagaaat
aaagaaataaaagactttttggaatttaatgagaatgaaggcacaacatagccaaactta
tgagacacaatgaaaacagtgctaagaggaaaactcatagctctgtgagtgcctccacaa
agaactcggagagcgcatacactaacagcttgaaagcacacctgatagctctagaacaaa
ataaggaaatacagccaagagaagtagacagcaggaaataatcaaactcagggctgaaat
caaccatgttaaaaaacaaaacaacaccaaaaaaaccaactacacaaagaatcaacaaaa
ccaggagctggttctttgagaaaatcaacaagagagataaacccttagccagactaacca
gaggggacagagacagtagccaaattatcaaaatcaaaaatgaaaagggagacataataa
cagaaactgaggtaattcaaaacaatcaacagatactaatacaagagccaatactcaaca
aaactgggaaatctggatgaaatggaaaggtttttggacagatatcaggtatcaaattta
aatcaagagtagagaaactttctaaacagtttcataacccctaaagcaaaagaaggagtc
attataagtcttccaacaaaaaaacagctcaggaccagatgggcttattgcagaattcta
ccagaccttcaaaggagactaaataccaatactcttcaaacttttccgcaaagtagaaaa
agaagtagcactatccaagccatcctatgaaaccacaactgggctcatacctaaacctca
caaagacccaacaatgaaagagaacatcagaccaatttcacttatgaatattgatgcaaa
aatactgaataaaattttcagaaactgaatccaagagcaaatcaaaataatcatctatca
taatcaagcaggcttcatcccagggatgcagggatggttcaatatatggaaatccatgaa
tgtaatccactatataagcaaactaaaagaaaaaaaaaaccatgatcatctcgttagatg
cggagaaagcatttgacaaaattcaacacctgttcatggttaaagtcttggaaagatcag
gaatccaagacccatgcctaatcatagtaaaagcaatatacagcaaaccagtaggcaaca
tcaaactaaatgaagagaaccttgaaacaatcccactaaaatcagggactagacaaggct
gcccattctctcccttcctattcaatatagtactcataattctagccagaacaattagac
aacacaaagaggttaaagggatacaatttggaaaggaagaagtcaaaatatcaatatttg
atagtgatagtatacttgagtgatcccaaaaattccaccagagaactactaaacctgata
aacaactttagcaaaatggctggatataatattaattcaaaccaatcagtagctttcctc
tactcaaaggataaataggctgagaaagaaattagggaaataacacccttcacagtagtc
tcaaataacataaaataccttggagtgactctaaccaatcaagtgagagttctgtatgac
aagtgtctgaagaaagaaatcaaagaagaccccagaagatttaaagatcttccatgctca
tggattggcaggattaatatggtaaaaacggcaatctatagattcaatgcagtccccatc
aaaattccaacccagttctgcatagagttaggaagagcaattctcaaattcatctgggat
atcaaaaaaacccagaatagcaaaaattattctcaagaataaaagaacttctctgggaat
cacatttgcatgctcattgtcacatgtgtatgtggaatgacaagttcaaatcagattgtt
caaaaatttcccctttaagattgcaaaaatggtatttaataataaatattttgaagaaca
tatctttaagtgccttgttaattatccctggagtgtttcttcttttgtatatgattctac
tcagttccttggtaaaataggttactgtgataagcactatgtagccaagagtgaagaaag
tgagtgtcagagcacacctggtcaaatgataacagaatgcttctctagactctgcattga
gtagacctggccaaactataatagaatgttccctagtctgtgcattttgtagacttcaca
tgacccatttttcacattcatcttaataaaagctaaaagatgtgccaaagagtagatttg
tgttacacttgaaattgatgttttgttgtgaccattaaagcattaattttgattacaagg
aaaactccactcattgggaagcagaatctatagtgacatttggtgaggggtttcaaatgc
acagatgtggtgtttgaatgatggaaaatcaaatgaactaaaattggaccaaaccagatg
cagatcctctgagctcaaccaaatgaattgtaagacagttggtctgcttatccaaacgtt
gtacatccaccactgatttaatgagaccagccctgcccatatcacacatcatcttgaggc
tattcctttctaaagatgagtttcaaagaatagttttaatgagatgcaatgatgaggaca
atctatcacagcctgagaaatggagtatgtaaagtggtacaaattttggaggattctcaa
acactccacgtatcatttcatccaagggcagtgcatattgaagagaaatgatctatgcta
tctaccaacacttaaaacagaaagataacagtttgataattgaatccattctcccgtctt
ggtgtttatgtaccaaggaaccaacttcattttcaaaggactgcttagtaagtgttagat
tggattaaaaacttcttggaaactgacttacaaagagtcttatgaattaattgcttactg
atttgtcataggatatagctttctagaaaaatctcagaagcttcagaacacaccattttt
cacctgacctaaactgtaatagcattgacataattttatatgttcatagtgtgcatgaat
atagcttcatgaccctgtttgttcttataaccttagaccgtttttctcagttaatagcct
tagactgccaccaagactatctaagtcctcttccctgtgtgcatgataaatatggtaaag
ttctggttgttgcatacttggtgtctgtaaaagcaacttattagccagatgtaactgtta
tctcacaggcttacagttgaataagttcagcctttttagctctttctgaactctggctgg
ctcattcaattcagctgttctggtctaaactcgtctccaggctgactaactcaatctggt
gtctttcaggttctgactgaactgttctgcttggtctcatactaactttggctatatatt
ctaatcttctggctcctcattatctggctggttctgtcttcacctgcaacctgtatctgt
aaaactgttctagtaaaactgcctccccttcctggaatcattttgtcaaatctctctttg
attcatcactctttctgcccttagctatcactttcgaacgtaggtgcttccttctacaaa
ctaacttaatctcattgtttgggattcaaagtgtgtggtatgtactaagtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgcgtgtgtgtgtatactccagttagagggattaagggtgtgt
ggtatgtatgtgttccatttgtatcacacagacctggaaggtctttggatctgatccctt
gtcagaacagataagggtaagcacagccaattgattacacctgtcagtatatgtggtatc
tgtttttctgtcccttctttattccctattcactaaagacaaatttccaggaccaagcca
gcctgaacatactctgatgatattcaggccactttacacctgtggacgtgtcttatcaag
ccaattattattgtagtttgcaaaattacagctggatatgactgatgatcatttttcccc
ggtagcattatgaaaattccagcattatgaaatctagccaatgagaaacttccatgtcag
tagcagtgtgctgtctccatgttttataattcagatatatgatgtcttcagcaatagggt
ctaaggtaaaggtttttttccaattccgtggtctgcctctttcttcacttaaaagatggt
gttcttcattgcatagaaatattttagtttcatgatgttctatttattacttgttggtct
gaatgcctgaacaataggtccaattcagaaagcccttcctatgccgatgagttcagcata
tactgttcacctgttagatttagggtaccaggccttatgtctagaatgccttaattcatt
tggagttgagttttatacatgctgataaatgagttgggtttatttagtttgattgcatca
tttcttgaagattCTGTCTTTTCTCCTGTGGGT
Primer
(+)AACTTCAACACAAGGAGGGA
(+)ACCCACAGGAGAAAAGACAG


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