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Human element [ hs2072 ]


Position: chr17:25,898,536-25,901,861 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: KSR1(intragenic)

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GGATGTGCAGGGTCCTATGTcaccacccacagggctctaggagcccacctttggcctctc
tggtctgaccagttcctggggaaaggtctggggttaaggatccctttcatcacccatgca
caccagtgatccaggttccacagatggacctgtgttccagcagcactgcctgaggcatgt
tctagggatgcaaaactgaacagaaacacagagcctgggtttgcttcttgatcttccttc
aacccagctttcacccgtgttcttgcgtgaagtgcagtgtgtttgtatacgtggccggta
cagcagcggtgccgcccctggcattttcctggtccacctgactggccacagggagtgtgg
cgcctctcagtgtcagcaggcccaggtttctaagtatagaccccaggcagccccgtggct
gctagtaaatccctggataccatttgatacctaactggccctgagctgccggcttaccca
gcatggcctgtgacgccagcctctgccagctgctgggggagggggtagcacgttgcccaa
acccatcctcaccctccactggagagaatggagaccagcagtctcctgctaatgacatga
ctggattgtcacagactgggagtgacctcagcactcaactggccctgctctccaattatt
atcagaaagaataacttaatcccacctactggagaacatatctcctggtttgagagagac
aggcagaggcagggagccaatgatctctgatgctgtcactctgctcctcattcctgcatc
cccacctgtgtgcacccatgctaaccctgagacttgtcggagctgggactgggcatctct
caagatggattgggcatctcctatgatggtctgggcatccatgtcttccgtttttggttt
gtagttccatattttgttctttagacagaagctggggtgggcagtaattccttggaggca
gtacggactcccagccgggttctccagaactttggggtatgggcagagagaggggccttt
tgcccttggctttgagacaacttagcatcttctgggcacctcctggcagatgggatgccc
tcctggggcactggagcctctcagacctgagaaggtttcagagtggcttcacctgcgagt
tcaccttcagcaggtggcaaaactgattccctaatttgtttttggtttagagatgatcca
ggaaagttgtgagttactctgctttgaaaacatcttcctaaatcagacttggctgtgcct
gtcactgtgggtgggcgagtcacatccatgtgtgaggtttcgggggtgctgagttgcttt
ggggcactgttgagtcatgatactgggagatatcagggcccctcgcaggggccttcacag
ccacgcgaccgtcctggtagctttcctttcttgattaagttaacattgggtctcagagtc
agttgtagagttgggaggtggggcactttgtttccagggtgggcccctcactgagaaagc
ctggtcccctggagtacttgctactgggcctgcatcctcccccgtttgcctacagaaata
aagttttagatgtcactcactgatcagattaaccttggaaggcatcagattcttcccatg
gggtctccgcgcttaggcctggaagccccatgttcctcatggacataatttgttttgttt
gcacagatttgaattagttatcaccatgtaaaagccagccatttaaaaataaaaattcag
atttctttaaaaccagaagttctggtgcccctccattgcctgcccctttccccaacacca
agggaggaaagcgggggttttctgtttagcattgccattgctgccgttgggtttcttgtt
cagtaaaaaggcagagaagtgtgttaaatcaagtttagcctagagctacctccttagata
ttttaagttcagcctaaaggtttttctgtatatcatgaactataacaagtggaggtataa
aaacactgtagactgcacttgtgccaatcaaatgtagccaactgttcgaatcttgttcaa
ataaggcaaaggagctgtaaccaatccagctgtttctgtacctcacttctattttctgaa
agtaggtagaaattaatttacttcgaaaaaaataatttcccctgaaaggtagctgctgta
tcccaaggctttgccaggttaacaagtggacagcatggaatatttggaggaggtttggaa
tcgtgcgcacgtgggtttcaattctgctcagccacttgttaagctgtgaagtctctgagc
ctcagtaagatggacttaactccatctacttgcggagttgattaaagataaaataatgta
tacaaagccctaggcatattgttctggcaaatagtttgtaataataaatgtagttacttt
gagaacttgaaacttggtatgggtgaggaggagatgaataaaaagaaagaaaaagaatcc
ctatttgcattatagttaggttgaagattgggtttcctcagcctggctccctccccagcc
ccattaaacatctctatcatcatctgggcaaactgctgagtcatcacagccttggagtat
gtggtggagagacaaactgaggacacccttccggacaagtagaggattgctttgttcaga
taaggtgaaggttgctcttgtgcttaccctgacggtatcgccaaggtgctcttaacagtc
aaatgagggcaaagatatccaaacctcatttcagtggaagacaggctaagggaaagaaag
caagacatgttgattgtatagaagcttctgcatggcaccatttgtctaatctgcctcccc
tgctggtgccgttctcatcagtggttcctgtgacactttagttttatcttctggaaggca
accagggttttggccaaccagtgatgagcttcttggtacagttatgtgtctggctttatt
ttggtgtgatcatgctaagtggtgatgtgattcttgcctacagccctgaagattgaagaa
tatactgaaaagctacaaaagcatctgccgtcagcgggtacagtaaaaaacaaacaaata
cagaaaggcaggcatctagctccagccttgctatgggagagaggggtatgggttgggcct
cataccttcaggactcagccagtatcttcattagggttagttttgacgcttgagacaagg
aattacagcatgtaaatggaatgacaatgaaattagtccttaaaagtaaaattagacaca
acttgctaaaaatcaggattggcttagattctcaagaactgtgagctttatagcagtcat
ttGATGTGGAATGTCTGGCCTTctct
Primer
(+)ggatgtgcagggtcctatgt
(+)caccaaggccagacattccacatc


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