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Mouse element [ mm2071 ]


Position: chr13:14,777,019-14,782,325 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGTCTGAATGCCTGAACAAtaggtccaattcagaaagcccttcctatgccgatgagttc
agcatatactgttcacctgttagatttagggtaccaggccttatgtctagaatgccttaa
ttcatttggagttgagttttatacatgctgataaatgagttgggtttatttagtttgatt
gcatcatttcttgaagattctgtcttttctcctgtgggtatttatttatccatttattta
tttatttttgcatcttcaaaaaggaaacaaaaggaagaaagaaaaaaagaagagaaagaa
aggaaagaaagaaggaaaagaaaagaaattgttcataggtggattgatttgtatccatgt
cctcaattccatgcgattagttcttgtttttagttcttatgtgtttttccatatgaaatt
tcagattatcttctcattttttgtaaaaatacattgaaattttgatagaggtcgcattga
atctgtaaatgacttttagttggattcccattttcacaacctgtgagcaagagagccggg
gcggtccttccatcatttattatcttcaatttctctctctctctctctctctctctctct
ttcattatttaaagttatcattgtataaatcttcaattttcttgattagacttattccaa
ggtatttcattattttgaggcttttgtgaataaattttttcttgatttctttcgttgtgt
gtgttttatatttgtatggaaaggataataatttagtgtgtttgtatcttgctagtttac
tcaaagtgtttcagcttgaggacatttctagtggaggctttggggtcttttatgcataat
cataccatgttcaaagaaggatcccttgacttcttcccgtcctatttgtatcatcttgat
cttctttggttgtcttattgctctagctaagagttcaggtgctatattgaatagttatat
atacagagaacaaccttgttttgtttctgattttattggaaactttttttttcagtttag
aaagctgtcgagtgtgatcttagtgtgtgttgcctttattatatttatatatgcctccta
tatctctatctttcctattatatttatatatgcctcctatatctctatctttccaggact
tttatcataaagggatttaggtttttttcaaaggcattatatttatgtaatgaaaaatca
tgtcttttcttttaatgtatagcttacagaatgtattatgtctattgatttacatatatt
gatccatatctccatctctgaaaggaagctgacttgattactgtggataattttttgaag
tgtttttgagttgggtttatcagtattatgttgaatttttaacatctatgttcattagaa
aaattgacatataatttctttttttatatatccttgtttggctctggcatcaggataata
ctgactttgaaaaagaagttggaatttttcttttattttctatttaatggtgtctctgtt
ggacaggttttatcgtcaactttacataagctaaagtctcctgagaggagaggacctcaa
tttaaaaaatgtttccataagattgggctgtaggcaagcctgtaaagaattttcttattt
agtgagtaatgagggcccagcccattatgggttgtgccatccctgggctgatgattctgg
gttttataaggaaaacaggctgtctacgctgttgagagcaagccagtaagcagcaccctt
tcatggcctctgcatcaactcctgcttccaggtccttgctctgtttgagttcctacagta
atgaacagagatatggtactgagtcacccccccccccaacttgctttggccatggtctct
cttcatagcaatagtaactcaaactagggcaatgtcattttaggagttttgcttttattg
attttttgaaaatatgatagaattttatactgaaagcaattgggtctgccccccctccac
taatttatttatttttattcactttacatcctgatcacaggcacgccttcctcttcttca
cagttttaagtccctcctcccattacctctcttctcctcaatgacaggggtagcaccccg
tcctgtgacatctagtccagcaggactaggcacatcctttcccactgaggcccaaccagg
cagtcaagctagggaagaggaagcaatgttagagcacccacatgaagacttagcttcaca
ttagctacacatgagtggggggcctaggtactgcccctgcacgctccctggttggtggaa
atctgggctttttaaagatgacagattgtttttttgtccttttattgaaaatagactttt
ttcttcacattatatatactgattgcagttcccacccctctactcttctagtatctcacc
acttctcatccagattccctccttttctgtctctcattagtaaaaaagcaagcttctaag
ggattaatattaaaatataagaatgtaaaacaaaaccaatacattgtaattggaaaaaca
aagagaaggaaaagagcccaagggaagtcatgagaaatagagacccatttgtctgtacac
tcaggagtctcataaaagtactgaactcgatgtcaaaacacatacccaaggactgtgtac
aggcccatgcaggccctgcacaggctgtttcagtgtgtgtgagtttgtatgtgttttggc
catgttgatttaaagggccttgcttctttggtggcctctaccccctctggttcttatact
tttcctgcctccactgtcacaggattgattcactcagccctgaagggagagatttaaaag
agaacacctatttcaggctgaatggtccaagatgtcttgttctttgcataatatctggct
gtgggtctctgtatttgttcctatctgctgtaggagaaagctaatcaaggcactgagttt
tgaatatagcagaatgttattagaaatcatttcattgctactttttcttcttagaacatt
tagtattcagtttttcctgggtcactggactatcaggatttttggtcacccaatcagtgt
caggtatggattacaaatcatggagtggctataagtcaaatcagatattggttggttact
ctcccacaggttttataccaccatcatactagtatatcttatatataggacaccattgta
gatcaaaagtttttgtgactgcctaggtgtttatttttctcttttaatagcatgcagagt
atattcctataccaaagttgctggaatagaggagtgatggttttatataggcaccagctc
atcttctcaatgttacatgagttgagtaggcattatctttggcaatggggccttttaatc
agtttgtggagagcaacctatatatagtctttgtagcagctgggttttgggggaatccca
gtgagcccccttcagctatcaactcaattatttgtaactcaatcctggtactaaaagctt
tatttagtgacaagaaaaaaagccaattagtgtcctgtctccataattatttggtggttt
catttggatggtctctgtatatgcatatttatgcatatatatacacatatatatgcattt
taagaactttctatagtactagagttccatgctaccctcaagtgactcttaattttagct
gtctctacccatattccatcatttttacttcctcctttccccctacccacttgatcttcc
cattccagacccagccatccaaccataactatctattgtatttccctttcttagtgaaat
ctgtcaccactagtctcttagtctatacctaacctcaggaattctacccattgtagctta
gttatacttatatataaacaagtatataccatatttgctttttgagtctagattatctca
ctcagaatgatattctctagttccatctatttacctgtgaattttgttatgtttgaaact
gctgagtaatactcacatatgtatatgtaccatattttctttatatattcttctgttgag
ggtcatctagtttgtttcctgttcctggctattatgagtagagcatcaatgaacgtggtt
gagcaagtgtctctgtggtaggatgaagcatcatttgggcatatgcccaagagtagtata
gctatatcttgaggtagattgaatctcatcttccttaggaactgccacactgacttccac
agaggttttacaagtttacactcctaccagcagtggacaagtgttccctttacctcatga
ccttgatagcatgagctgtcacttttcttggcctattttgataggtataaaatgaaatct
caaagtagttggggctttttagttaatttattttgatgtgtgtaagcacactgtcgctgt
cttcagatataccagcagagggcatcagatgtccttaccgttttgagccaccatgtggtt
gctgggacttgaactcagtacctctggaagagcggtcagtgctcttaaccactgaatcat
ctctccagccccatcaaagcagatttgatttgtatttccctgaaggctaaggaagttgaa
catttcaactctttctcagccatttgagtttcctcttctgagaattctgtttagatctgt
aaagcccttttaaattaggttatttattttcttaatatctagtttttgagcttttcatat
gttagatattatttcactattggatgtggagttgttaaactgcggctttgtcagaatgat
ggtgtctttcccatgcagaagcttttctgttccaagtagtcacatttattaattgttctc
agtgcctatgttaataatgttccactcagaaagtcaactcctgtggaaatgcattcaagg
ctactcctcacgttatcttctgtcagattcagtgtactttgttttatgttgaggtctttg
gtgcatttgaacttgaatttggacagggtagtaaatatggatctatctgcattcttctac
ataaggccgtccagcttaaccagaactgtttgttgaggattttccccagtgtgtgtttct
tgcttctttataaaaaataatcggggtgtagattcatctttgggttttcaaattaattgc
actaatcaatatgtttgtttctgtgcaagtaccatactattttatttattaaagctctgt
agtaaaattcgatgtcaggtgtcagggatggtgatacctctagcagttattttattattc
aggttttattttttagttattctggtgtgtgtgtccatttaaagataacattgtcttttc
aagttctGTGAGGAATTGTTTGGGAAT
Primer
(+)TGGTCTGAATGCCTGAACAA
(+)ATTCCCAAACAATTCCTCAC


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