Vista Enhancer Logo
Enhancer Browser banner
Vista Logo

Mouse element [ mm2069 ]


Position: chr13:14,791,632-14,796,840 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CTCTTGCCCTCTTTGGTTCTtagggaagtttggtacatgtttggttttggtgggaaattt
atctgggatcctagataaaatgtgtttctaggtgttgaggactggcaattaggaatgggg
atgggctaaaagaggagcctatgggtccacaggagaaagaaaaacagatgttacactagg
atttacttagtctcctggggatggtggcagagtgtgagagagtcctcatcaggtggtctg
ctacagagctgggaattagtctgggcaattgaacttggaggaatgcatggagagatgaag
atctgcagttagcctacctatttccctgggcataatggctgtggattcccagggattgcc
tgctggagttgtggactgggataaaacaacaagctgggggaaggaagtttggaggggaag
atctagtgatccactgtagaggagagtgcagagagggagcactgaagagggtgttatgct
gtcaagctggggatgagattgcgaaagtggttttggagaagctgagggagagttgaatga
agatctgcagttagcccacctgcttccctggctggtgtggcctgtccactcactagaaaa
attcagggagtgcctgttggatttggcggctaggataaagtaatatatgtagggaaggaa
gtcagaagagaaagatttgtgtgatgcactggagatgaaggcaggatataggaagggagg
atgcagtaagtggtctgctgtagagctgggaaggaggctggggaattccatttgtaggag
ctaaaaaaatagaaaggtaacgatctgcagctagcctacttacttccctggccagaatca
ggccccactttttcacacaccatcatgattactttttagactagtattcaaagtagtttt
aaaaattacttcatttcattattcatatgggtgtactttgacactttgacaatatttgtc
gaattttccatattcacaggcatttctgaacataacattttcattaagaattattctgag
gatctgatcaaagtgcctgtttactgttacattgcaaggcttctcctcactgtatgattt
atgacttctcagatatatcccatgtctctaggctttgtatttaaactggattttgggtta
aatctttttttttttttttttctgccagctggttgagaactagaagcaactgtttgcaaa
gcaagagtaagcttcccactgcacctgtttgcagtcttctgactgagctactgggatctg
atacttagattgtgtggtgtcattctgctctttagaagaattccgttaaaaatgatctca
ggtccactttcctcttgtgaatgttgtgtgcgatcttttcaccttgggcatttttgaaga
gacatttctctcttttcaaatctttgcataggtagatgttttcatttgtcttttgtgaac
atgcagtagcagaaagggctgggacatatttgaaaatgatagtgcataagaattttcagt
tcatctatatcccatgaccacttgttatgatgtctttttagtctgaactattctgataga
tgcccagtgttataacattatgattttaatttttcatttccttgatgatacatttccttg
atgtggatttttgccattgttgttaaagctacagttgataggttaaggtttcaggagtct
tgtgtgccctgcttgatagtggaagcacaggagtgcacatagatgtatggaataggaata
tcaggaccaggaggcagaagaagggaactgtagtcataaaggtcataatagcaactgcag
attccttcaaagatcagtacaggtcatggacattagataagaagattgaagatatgagga
ttcagagaggtccaagtgtatagagacagtaaatatgcctgctaatccctttacttgtgg
cccaggaatgttccacggcttacattattctgtttttttatctgcatctttgatgatgct
atatgaatagtatgaactaaagtatgcaatatttattggccatagaggtgtgcttgtgaa
cagatgatgactagtcctttcaaatttttgtgatgtaaatagttgcatcattactgattt
gaggatacactgtactgttacaagatgcacataatctgctgttgtgagactcatggcagt
catatattggttctttccactaaagtattgcagtgtcctataagaaacatgaatattact
ttaatatctccatccaaataatggctaatacttttattgaaataagtgacaataaattgc
ttgtagatgggtacaggagagctggcactggtggtgtaagtgcaagaaagcttgctccag
cacttgcctgggtagtgcaggcgtgctggccccagtggctagtgtaggtgcaggaaaatt
ggcaggttgaccaatttcagctaccatccacctccagatccagggctttgagttgaccca
tcccaacatctactcctatgttgagaatgaacttctggagcacagaaggggatgatcctg
caaaatcaaagctgcaggatctccatgattcagggcaacagcaggctatcagaaagaagt
ctcgatgaggatccagcattgactgtgtagcagaatccagaggccttgaatcagaccaat
gactcattgcaatgaacatttgcaagtaaagctgtttgatacatcgtgatacactgcagc
ttccatagcaaatttttaaacataatcaagggggtagattacaaaggtggaggagggata
tggaaggactgggaaattagtgaaattggggtgcatgatgtgaacattataaaaatcaat
taaaaatatgttaaaaattaaacattgaaagtgacataaaacagtgtcagaagtggttaa
gaagttagattttgagttacaagctcctagattctgctggtggtggtctaagaacagcat
attgagaataattaatccaattccagagctctgctctttgcctggcatccactgtctata
tgatctgacccctactcatgtgtactgatggatgtttaaagttagaccatgtggaatttc
atttcaagttctgctttttacctgcacacacactgtgtctgcttttgtcagtccctcatg
gtcagcttccaagcatagacactgctatgctgtgctccatgtcagttctcttcatgctga
atatccacttctttacacctctgagagaggataattgtgtcttctcagagtccactcagt
atgattgttcagaaactctgttaagataacatttattttatgtaaaggcatgatttttta
aaaaaatatttttattacgtattttcctcaattacacttccaatgctatcccaaaagtcc
ccgataccaccccccactctcctacccacccattcccactttttggctctggagttcccc
tgtactggggcatataaagtttgcgtgtccaatgggcctctctttccagtgatggccgac
taggccaggcatgattgtttttaataattattgtggcatggtagaacttaagaatgaatg
acttcattatcttcatgagataggattttaggtcagcttcctgattttcaggtgtgttgg
tgtatccagagcatcctgtggtgggagaactgggttctgatgatgccaaagtatattggt
tctgttgcttatgatcttatgcttgcctcttgccatatggttatccctggtgtttgctgg
tctgggtgactctctctggagcctgcctcttgagtcctgaggttgcttcaggtctcctgg
taggcctgaatgcatgactatagcagacctcctgtgggacattcagattgtggggtcttt
agaggggtatgtatgctggtgacctgttgccatggccacagtgcctttcctggaaggctt
tgagactgtgggatcttaagctatactacagagcaatagtgatgaaaactgcatggtatt
cgtacagatacagacacattaaccaatggaatagaattgaaggcccagaaataaaaccac
acacttatggacacatgatctttgacaaagaagtgaaaaatatacagtggaaaaaataaa
gcatcttcaataaatggtgctagtctaactggaagtatgtatgtaggaaaatgaaaatag
atccacatttgtcaccttgcacaaagctcaagtctaagtggatcaaggacctcagcataa
aaccagatacactgaatctaatagaagataaaccgggaaagaaccttgaactcattggca
caggggaaatttcctaaacagaaatccaatggctcaggctctaagatcaagaattgataa
atgggacttcattaaattggaaagcttctgtaaggcaaaggacatagtcgataggacaaa
ccggcaacctacagattgggaaaaaaaatcttcactgacaccacattctttagagggcta
atatccaaaatatataaagaagtcaagaggctaactaccaagaaaccaaacaacccaatt
taaaaaaatcggttatagaactaaacagggaattcacaacagaggaatcttgaatggctg
aggagcacttaaagaaatgttcaaagtccttaatcagcagggaaatgcaaatcaaaacag
ccccaagattccaccttacaccaatcagaatggctaagatcaaaaactcaggtgacagca
catgttggcaaggatatggagaaagaggaacactcctccattgctggtaggattgcaaac
tggtacaacaactctgaaaatctggaggttcctcagaaaattggaagtagatctacttgc
agacccaactataccctcttttggacatataccaaaaggatgccccaccatgtcacaggg
catgtgttccactatgttcatagtgggcaaatttgtggtagccagaagctggaaacaacc
cagatgttccacaacagaagaatggatacagaaaatgttgttcatttatataatggaata
ctactcagctattaagaatgagggaatcatgagttttgcaggcaaatgggtgaaactagc
aaatatcatcctgagtgaggtaactcagtcccaaaaggacatgcatggtatatactcact
aataagtcgatattagtaaaaaaaaaaaaaaaagtacagaatacccagaataaaattcat
agactccaagaagggttaacaagccaaagAGTCCAAGTGAGAATGCCTC
Primer
(+)CTCTTGCCCTCTTTGGTTCT
(+)GAGGCATTCTCACTTGGACT


For commercial licensing of the VISTA Enhancer Browser and its associated data please contact Virginia de la Puente (vtdelapuente@lbl.gov) at the Berkeley Lab's Innovation and Partnerships Office.