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Mouse element [ mm2068 ]


Position: chr13:14,796,551-14,802,014 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
CCAGATGTTCCACAACAGAAgaatggatacagaaaatgttgttcatttatataatggaat
actactcagctattaagaatgagggaatcatgagttttgcaggcaaatgggtgaaactag
caaatatcatcctgagtgaggtaactcagtcccaaaaggacatgcatggtatatactcac
taataagtcgatattagtaaaaaaaaaaaaaaaagtacagaatacccagaataaaattca
tagactccaagaagggttaacaagccaaagagtccaagtgagaatgcctcaatctcattt
gggagggagaagacatcattggggctgggagggagggagttacctgtgtgggaaagggga
tggggggaagaggggaatgtgttcatgtattggggattggaacaggactgaagccttgag
ggccagcagaaagagtggaaaagggtaaccttgggaggtaggaggttgggtgaccctcta
gaatgtaccagagacctgggatgtgagagaccctcatgaatcaaagtgaggggaccttag
atgaaatgccgtacagtgggaacagggaacttgtagtgttcacctccagtagaaagacgg
tatcaatggatggggttgccattccagtccaaagctctgacacagaattgttcttgtcta
aaagaactacagggtcaaaaattgagaagagccctagggaaaggaagttcggttattggc
ccaaattgggatccagctcaaggggaggtccaaagacctgacaggagcctagcatgactg
ccctttgaaaggcccaacaagcagctgaaggagtcagatgcagatatttgcacccaacca
atggacagaagcagctgacccctgttgttgtattagggaaggctgaaaaaagctgaggag
aagggtgatcctgtaggaagaccagcagtctcaatctggacccccaagttctctcaaaca
ctggaccaacaaccaggtagcatacactacctgatatgaggcccccaacacatatacagc
agaggacttctgggtcttgagagaagatgcgcctaactgacaagagagttgaggccccag
agagtggggaggtttgttggggtcggtgtgggatgggtggggacatcctcgtggatggat
aacatcaaggatggtaattcaatttctggcttccccatgtacacacacacacacacacac
acacacacacacacacacacacaaaatatattcagatctaaagctattgccattaggtat
actacggaatgagttaaccttataaataatgctttcatttattttatgtgtataagtatt
ttgccttcataatgtctgtgtaccaagtgtctagataggatataaaagagcattagatct
cttggaactgtaattacaggtgattttgagccaccacttttgggtatgggaaactaaacc
taggtcctcaggaagaacagtggagtgctctcaggagcagaatcatttgttccaatcctg
agtgagataaactttgcaaagtacactggaatcagggaaaagtccatcagcatttgcaga
tttgatttttaggtttcctgagtatgactgtttataaggttggaaggtactgtgaaatga
gaatgtggtgaaaaaaattaaagagcaaatacttagagcttaggtcagtttttgggcaac
ttggagtatgcctatgcaatgttgtgcacagtgtgtgtttctgtgtgtatctatttatat
gtatattatatgtagactgtgctgtatatgcaagatgtgggttagggtagaggtagaaag
gaaaagaggttgcttgaggtttctcccttaagggattgtgcactcctacataaaatccaa
atataatgaattttggaatgcaagcagagattatccatcaagttgcagaggtggaaggct
gccttcagacatggaatatgacagataattatccagtcttttgacagcatgtctgctacc
caataattcaaactactggtatgaactaaaaagctaaaaatcccgatgaagttggaaaag
aagcttaagaatttgtctttaccacatgttctggagtctattctctcatttttagctggg
aaaaagtgagaggtagccaagcctggaacagatgtttgcttaggagagcctcagcttggt
cccccagtttattgtggttctttcattttctataaatgttaagttaaagtaaaattctga
agagtaattgaatagttgaattccttatatatgcacagtgcttcagcagttcaaaatgac
tttatattccatagggaaataacatgatcatcatttttttttgtttcattaatttttaat
tttaattttatttgtatggatattttgcatgtttatgtatcagtttaccacatgtcttca
gtgtctgtggaggccaaagaggatgttaggtcctgtggtactaaagttacagatgattgt
gagcaatcatgtgtgtgctaggaattaaacctgagtcctttggaagagcagtcagtattc
ttgatcaatgagccatctcttcagccctgttcttgatgggtttttgtacatatacagtaa
tacaaaatggaactgacaatgtagctcagtggttgaattcatacctagcatgtacaaggc
cctgggtttactccaagtaccaaaaaaagtccatacaaagtagttaatatggtaggtagt
ggtaacacactattttaatcctttgtcagcatatttgatttttaaattcaaatatggtat
tattattacatgaatagagttaggcttttgatttggggtactttgaagtgtcaaaaaatt
ttatttgaactaatgtaataagtgtaggcattttcacaaatgcctctttcattacaaaag
agttttcaagaaagtaattatatagacatataggaggccctcttccaagctcaccttcat
cccctaaagaacctcttggttcagaaccaggcttctctaactctctactgttgcctcttt
caaccttcattctagcccagctctatttctttgtgatgcatacctacttgtagaaccact
atgtaccagggtatccccaaagccacactagctgtgatcctggtaggtgattttattatc
cctcttgtcctgtattgccttgtgtcttagtcagggtttctattcctgcacaaacatcat
gaccaagaagcaagttggggaggaaagggtttattcggcttacatttccatactgctgtt
gatcaccaaaggatgcaggactggaactcaagcaggtcagaaagcaggagctgatgcaga
ggccatggagggatgttctttactggcttgctcagcctgctctcttatagaacccaagac
aaccagcccagagatggtcccacccacaaggggccttgcccccttgatcactaattgaga
aaatgccttacagttggatctcatggaggcatttcctcaactgaagctcctttctctgtg
ataactccagctgtgtcaagttgacacaaaactagccaatacagctgaccccttgtcaac
ttgacacacaaacacatcactagtaagcctcaacccttacattcttattcatccccaagg
tctaaataactttaaatgtcccacagtctttacatattcttaaaatttcaatctctttaa
aatatccatctcttttaaaaatccaaagtctttttaaattaaaagtctcttaactgtggg
catcactaaaacagtttcttccttcaagagggaaaatatcagggcacagtcacaatcaaa
agcaaaaatcaatctccaaccgtccaatgtctgggatccaactcacgatcttctgggctc
ctccaagggcttgggtcacttctccagccatgccctttgtagcacacgcgtcatcctcta
ggctccagatgcctctactccactgctgctgctgctcttggtggtcatctcatggtactg
gcatctccaaaacactgcatgaccccttcagtcctgggccatcaattgcaactgaggctg
cactttcaccaatggccttccatggcctctcacagtgccaagcctcagctgctctgctca
actccttcatgccttcaaaaccagtaccacctgggtgacccttacacgttaccaagtcca
gccagagcacaaggtacaactttggctatatctggaacgcagccactgtgctctcagaaa
acacttcccagaagatgtcacctcaatgatgctggtctcttcttaatcaccgctaatttc
ttagctccagctaaccagcatcaaaagtcccagtaatgcaaagtttttgctttagtagtt
ctggtatcttgttaatcacagctgattcttcagccccagctaaccagaactacagaatct
tcacaatcaaaacagcaatggccctgaaaagagtctttaattttccctctgaaatttcac
aaaccagacctccatcttctgcagtgttctcaacattatcttccaagctcctacacaaca
tctgacagagctcttaacaatggatggatcttcaagcccaaagttccaaagtccttccac
agtcctccccagaacatggtcaggttgtcacaggaataccccactctgctggtaccaatt
tgtcttagtcagggtttctattcctgcacaaacatcatgaccaagaagcaagttggggag
gaaagggtttattcggcttacatttccatactgctgttgatcaccaaaggatgcaggact
ggaactcaagcaggtcagaaagcaggagctgatgcagaggccatggagggatgttcttta
ctggcttgctcagcctgctctcttatagaacccaagacaaccagcccagagatggtccca
cccacaaggggccttgcccccttgatcactaattgagaaaatgccttacagttggatctc
atggaggcatttcctcaactgaagctcctttctctgtgataactccagctgtgtcaagtt
gacacaaaactagccaatacaccttgtcttgtctctctgtacttattcctagtcctgctg
cagcctgatgtcaggaccctctgccatgctgaactctgggactccacttcctggtacaaa
gctcccctagtgccttcctgcagccccttcagcctttctttctagcccatcttcatttct
ttgcaacaccaaccaatgcacagaaatgctttctacctgggaacccagaaccatcacatt
tgcttaggccacagactcagcaacagcagccagagaaaagaatacccacccaacagagat
aagaccagatatctacaccaggaaacacaccaaatatcttaactttgtatgcctatatcc
cagagccaaaacacaaacatgaacaaccaagacaatatgcttcctgtagaagccaccagt
gctattacaataggtcctgaaaaatacaatttagctgaaacacaAGACATGCACTTCCAA
AGAG
Primer
(+)CCAGATGTTCCACAACAGAA
(+)CTCTTTGGAAGTGCATGTCT


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