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Mouse element [ mm2067 ]


Position: chr13:14,801,631-14,806,735 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
ACTCCACTTCCTGGTACAAAgctcccctagtgccttcctgcagccccttcagcctttctt
tctagcccatcttcatttctttgcaacaccaaccaatgcacagaaatgctttctacctgg
gaacccagaaccatcacatttgcttaggccacagactcagcaacagcagccagagaaaag
aatacccacccaacagagataagaccagatatctacaccaggaaacacaccaaatatctt
aactttgtatgcctatatcccagagccaaaacacaaacatgaacaaccaagacaatatgc
ttcctgtagaagccaccagtgctattacaataggtcctgaaaaatacaatttagctgaaa
cacaagacatgcacttccaaagagcaattatgaatatgtccaaggactttaaagagggtg
tagaattaatgcctaatagaagctgtgaaaatacaaatagttgaatgaaagaatggaaac
aattcaagacatgaaagtagaacttaacaaagaaatagaatcattaaaataaacccaata
tgaaattaaattagaaatcaaaactttaggatgtcaaataaaaatttcagaggtcagcct
caccaacatattaaatgacatggaagagagatatcagatcttgaagagtgagaagaagaa
aagatagctcagccaaagagaatgttaaatttaaaaaatatccagatacaaaatatctag
gaaaactgggacactgaaaaatatatataaataatagtgcactggatagttttatttcaa
cttgacacaaactacagttatcttaaaggaggaaattcaattaagaaaatgccttcatgc
caggtggtggtggtgcacgtctttaatcccagcacatgggaggtagaggcaggcagattt
ctgagttcgaggccaggctggtcttcagagtgagttccaagacatccagggctacacaga
gaaaccctgtattgaaaaccaaaaaaaaaaaagcctccataaattctggttgttgggaat
tgatggaggagggcccaatacattgttgatggacctattcctggtttgagcaagccatga
gcaagacagtgaatagcactccctcaatgggctctgtatcagctcctgcatccaggttcc
tgccttgcttgacttcctgttctcaattctctcagtgatggactattatatggaagtata
agccaaacacacccttttcttcttgagttcattttggttatggtgtttcattatagcaat
agaaatcctaagacaaatagggatagaagaaggaaaagaaaccctggtgaaaggcacaga
aaaatattttaacaaaatcatagaagaaaaacttcccaacctaagaaaaatatatttatt
aggagtcaagaaacatacagtatatcaagtagatagaatcataaaatatattgtccacaa
catgtaataataaaaacagtaaatatacaaaacaaagaaagaacattaaaagctgcaggg
gaaaaatacaaagtcacatgcaaatgcatacccattatattaagatctgactgttcaata
gagattttgaaggccaaaaagtccaggataaattaacttagagatcatagatgccagcat
agactacaatacccaccaaaactatcaattacagtcaatggtgaaagaagaaacaatcta
tgatttaaaaaatattaggtgggctagagagatgattcagtggttaagagcactgactgc
tcttccagaggtcctgagttcaattcccagcaaccacacgatggctcacaaccatcagta
atgggatttgatgccctcttctggtatgtctgaagacagctgcagtgtactcataaaacc
aaataagaaagaataaaaacaggcaactttgggaggtaggaggttgggggaaaccctcca
gaatgtaccagagacctgagaggtgagagactctcagaactcatagggagggactttaga
tgaaatgccctatagtagcaagagggaacttatagagccacctccatcagaaagacatgg
catcaagtaagggatggggttgccatcccacagtcaaaactctgacccacaattgttcct
gtctgaaagaactgcagggatggaaatggagagaagtctgaggaaaggaaggtccaacgc
gggccaaaagtgggatccagctcaaggggaggcgccaaggcctgacactgagactatgga
gcactcacacaaagggacctatcatgactgtgctacatccactccagtagtgacaagtat
aaccaaaacctgggcactgtcctgaggcaaaaagttcacagaaacttagtctcctggaag
cgtggcatcctgtataacaaatgctccaatgttcttgctttaaagtctgttttgtcagat
ataactatacctgccccattttttcttcattttcttggaatgcattttctataattttac
cctgtgctgatatatacccttgatggctacatcttgatgcagtagaaagttgaatcctgt
tttctaatccaatctgtaaatctctgtcatataattgggaaattgcagccactaatattg
ggaattattaatgagcattatttattggcttttgtgatctaaggaggaaccagagtaaat
acttagaactatagatagctgagttacacccctacataagtatttacaatggcctagggg
gaaggtggactatacaatagactagaataggaactatggccagggcatgaaacccttgcc
cctggcttctaaatttaaactgactttaggtggggctgtttttgatcccagtagttaaca
ttgaattgtatcccagttggttcctgccagtccttctgtgtttgcattcctctgttttat
gtaagaatccagtaacctcattgtaccttgctggtgtgtcacctaacttccctattttct
tctgtataaaaagtttaatgctggatttgacattacattcagatccacactcccttgtgt
cgagtctgtttgtcaccccactttcgccaactcctttgcctacctacaaccagaacccat
tccgtgcagataggagacccagaaggggtaagtctgtggcatgactgccctcagaaagac
ccaacaaacagctggaagagtcagatgaagatatttgcaaacaaccaatggatagaagct
gctgactacctgtgactgaattagggaaaagctgaatgaagcagaagaggaagacaaccc
tataggaggactagcagtctcagttaacttggactcccgagatctctcaaacactgaacc
accaacaggcagcatacatcagctggtatgaggccaatgcacatacagcagaggattgct
gagtctgggttcagtcaaagaagattcacctaaccctcaagagactggaggccctaggaa
gtttagaggtcttgggggtgaggagggtagagggttggtagggacatccttatggaggca
gggggtgggaaggaggtatgggatgtgaaacagttggagggtggaccaggaggagaatga
aatcgggaatgtaaaaaaaataaataaaatgtaaaaacaaaacaaaacaaccaactaggt
aatgtctgtccaatatgccagctttccagaggtactagatggaaagttcagcctgaagag
aaggttcactatacatgagaacataatgcatacgtaatcctaaaacagtaaattaaaaga
ggcaaatgaagcaaatcaaaaacaaaacaaaataaaaccccaaaacgaaaaccaaaaacc
ccttaccaccaaaataaagtaacaggaaccaataaataatgctcattaataattcccaat
attagtggctgcaatttcccaattatatgacagagatttacagattggattagaaaacag
gattcaactttctactgcatcaagatgtagccatcaagggtatatatcagcacagtgtaa
aattatagaaaatgcattccaagaaaatgaagaaaaaaatggggcaggtatagttatatc
tgacaaaacagactttaaacaaaatctaaacagaacagatagtaaagtatatgatgtact
tatgaaggaaaaatccacaaaggactctgtaattctaaacatttatgcactgaacacaag
aacactcaaggacataaatgtaacattactatagctacagtcacacattgaccttgccat
agtgatagtaggtgactttaacaccactatttttctcatacacaggtcattcaaacaaaa
actaaacagaacttctgaagttaaatagcatcaaaagtcaaacggacctaatagatatca
ccagaccacaaaagaatgtacttttctcccataagctcatggaattttcttcaaaactaa
taatgtatcagtatgcaaagctagtctcaacatatataaaacaattggaataacaactat
aactacttgactaccttggattaaagctggatagatagcagcagcaacagaagaagtaaa
aagtatactaactcatggaaaataaacaactcattcctgaataaaaattgagtcaaaaca
aatcaagaaagaaattaaaacctttttataattgaaagaaaataaaaccacaaaataccc
aagcttatgagacacaatgaaaacagctctaagaggcgagttcatggcaccaagtgccta
cttaaataaattggagggttctcatattaacaacttaatgacacacttggaaactcaagt
tggcttcattccagagatgcaaggaaagttcaacatatataagccaataagtgagacata
tcacataaacagactgaaaaaaaatcacataatcatctcatcagatgcagaaaagaacat
tggcaacatggcaaaatccaacattctttcactgtaaaagttctggagacatcagggata
caatggatatacctcaatgtaacataggcagtttgctgtcagcccatagccaatgtcaac
ctaaatggagagaaattaaaagaatttccactaaaatcaggaacaacacaaggatgaaca
tcttcatacctgttcttgaactcttattgccagagcaataagaaaACTGAAGGAAGCCAA
GAGAA
Primer
(+)ACTCCACTTCCTGGTACAAA
(+)TTCTCTTGGCTTCCTTCAGT


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