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Mouse element [ mm2066 ]


Position: chr13:14,806,534-14,811,790 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGAGACATCAGGGATACAAtggatatacctcaatgtaacataggcagtttgctgtcagc
ccatagccaatgtcaacctaaatggagagaaattaaaagaatttccactaaaatcaggaa
caacacaaggatgaacatcttcatacctgttcttgaactcttattgccagagcaataaga
aaactgaaggaagccaagagaatataactagaaaaggaagaaatgaaagtatctttattt
gtgtatacttttataattaagagacctaaagactctaccaggaaacatctacagatgata
aacactttcagaaaaagtagcagtacacaaaattaacagacaaaattcagtcaccttgct
ataaacaaatgacaaacatactgaggaagaaataaaggaaacagtacctttaacaatagc
ctcagatatagattgtgataatgcaaccaagtaagtgataaagtactataaaatttttat
gggattaaagaaggctcttgaatactgtagaatcagtaggattaatattgtgaaaacagt
cattctaccaaaagcaatccacagattcaatgtaattcccatcaaaattctaatacaatt
cttcacagaaataaaaaaaaagtcttcatttttatacaaaatcacaaaatacccagtata
gctaaacaattataaataataaaagaacttattgcagtatcaccattgtagatttcaagt
tgtagaatgataatagcataaaataataatatcacaaataaaataaaaatatcataaata
aagacacacacacacacatacatacatttgaatgaaaatttcccatcttgactgataatc
tacctccaagagtcaaagatgatctaacaaaagttccaacactaagggactcccaatgtt
ttacatattataactatactgttgaattgtcccccagaggtagaaagtaagtacttattg
ctgaagataccattcatttcagacatggggctcagaggctcctaagctggaattgacctg
aatgtttcctctatgtagactaactctcatggtaccagaagattccatgtaaccttccaa
aggatggaagcagctaatagccctatcttatctatgatggctatgaactacagcaatgac
caaagtggtatgataactgtacagctgtgctactggcacacatacctttgtgataacaat
agctttctaactggggcataacctctgctaaacaagagggaaatcaagcctggtacctga
aacctagctaactacgcagggctagtaaagccacagaccttggagtaagacctacaactt
agtctttcctaaaccagagtaatccacgactatattctggatgtctgttcttataacatg
taattaattcctcaccctgcatcaaagaaacttccatttggaatagaaggagatcattat
aaaagacaagaactaactaaaatgcagaagtgttgagcccagacccaactgatacatctt
taatacatctaccactcttaaggctcagggatcattgagaaaaagggaaaaggactgtaa
gagacagtagatcagagttttgtgggattttgtctcctaggaatgtcaaatacttccctc
aataaggtctctcccacatgtccacctaaacatgagccaatcaagacaacaatggacatg
ctaaagttgacaggaaacaagcccacaagtcctcaactgtacacacacacacacacacac
aaaaatagatacaactgagaaatatcaagtgtgggaaaaatgcacttcccagagacgatc
acaatgattggctatccaataccaatggtcagtcctgaaagcacacatataagtactatt
attcagactaagtacataaatgtgtgtgtgtgtatgtatgtgtgcatatatatgtatgta
taatgataattaataaaaagaccataaagttgaatgtgaacaaggataggtattggaggg
aagaaagagaaggggaaattttatatttttattataatctccccccaaaataataattaa
aaaataaaccttcctaaatattggcatctgagccctctgaagaactttttagaagttggt
ttttgccccaaaagaactagagcatttttcttcatggctatgtaaaccacagggcctctg
aaacatgagtgaaaaagcattgaatagccacctcaaatatttcagaagaaaatatcttct
gttgaaactatatagatactcttcataaaataaacttagtatataattactactccttct
tacagtaaataataataataataaatataataataaatctaaaaatgaagagaccagtac
cactgaggtcacatctaaaaaatgtttcttcaggttctgcacacagaaattgtgctccac
atgctggcagctaaatttggtaatatgtaagattttcccaggtagtactagtaatgaagt
catggagagcagtagtagaggcttagcactatgagaggccaggagggtcattgtaaatgt
gcagccttagttaaagtagaagctaaaggattgaaggggacatggagagaatttgaggct
tagcaccatgtggcagtgtcagagtccccaaagaaagcccaggcggccattggtgaaggg
gcagcccagtttcagtggagaacccaaccttcagaagatgccagttccctgggatgactg
acaaggaaagcagcagccttggagtgaagccaactggagcttagaagacaaactgtgtgt
tgtggatgtcagtgccagagaagtgccacggccaagttcctttggagtctagaaaattgt
gactgggtcatgtacatcaagcattaaactttttatgctgttgaaattcagttttgcttt
gctttgattgtgactctgacctggatgtcctctcttgaagtaggaaagttttaacttgtt
tttctgattttgcagtaaccagttatgtgatatttgatagtttagaaaggccttggatac
tatagagagacttcagcatttttcagagacattagagtatcagaaataccttaactgttt
tagagagattaaacttttaaataaaagactgaatttttaaagcattcaaacttttaaaga
agttttaaagaagttttaaaagtttgaatattttatatttgtgatattaatattcatatg
aaacattgaggatcgactaggaaggaaaggttatggtttacagtgatgcatttttatgtc
aagttgacaagaggtcaattgtgctgcttaattttatttcaacttgacacaagtgagagt
tattttggaaggcagactctcagttgagaaaatgatcctaccagaatcaccatgggcagt
gccaccttgggctggtgggtcctgattatacaaagaagcaagccgtccaagtcctgcaga
acaagctagtaagaagcacccctccatggcatctgcatcagctcctgcctccaggttact
gccctgcttgagttcctgtcctgatttcctttgttgatggactatggtgtgcaagtataa
ttctaataaaccccgttctcccaagttgcttttggtcattgtattttatcagcaacagaa
accctaaataagtcactgtgtattcactccttccattccgtcatgcagtgaacacagctt
tcaaattctgtaatgctgctctcctaatgaatgatgtaatggaagcagggcatgtagact
tctcttttggctgggtaaattctgctttttctcccactcactgcaggtgtttcaactcat
gcaagaaaaatcagattttccgtgcttagaccaaccttctcaaatttctcaccagcaggg
cacaaggtcctaattacttcatgggtaccagctaattaattaaaaaattatttttcgcag
cctttaaagtgagttcagccagacactatttgggctagaaatgtcattttcatgtctctg
ctctgttgacaaaatgataggatgataatttagctgagaagaatgaaatgaatgggctgg
tcatttcctctgtgattcaaagtaatcgcaggcagaaccttgcagagattccaaatttgc
tctaggtcactctgatttgcactccatactcttgccataaggtttctttctttctttttt
ttttatccaagtactgttttcttttcttttctctttctcaaagattcaatttgaaatgat
cagatgaatgtagtgattctaagaaaactaaatgagtttttcctattgtgatatctttat
tttaaaatgcacttttaaggcaatactactctatggccttacaatcagctcctgattcta
ggttcaagttcctgccttggctttcctcaagtatttaaaaagataccttcatacttgagc
ttcatttaaaaacaaaattaatttctagatagttcttcataaatttttcatacttccatt
ttattattttgtataaaagaccataaggacacactacttatcatcatacatataggaggc
agctggaaaaatatttatacagtagctctaagatttaatagagagcagttgattttttca
tgtttttgttaagcatgagttagtcactatgtgtggtgttgcatgactgtaatctatgat
gtgatgtggtggaaactgaagaatgacaagatcaagaccagcctgaactatacagcataa
ccctgtctcagaaaagggaagaaagaaatgatcatttgtgtttgtgcttcataattgtct
atatcagtctgttagttttgaaggtgtaattagtgctcatctggtttgatggtcttatct
tagagaagaagaaatcaatataaagaagaatgaaactgacatctggaattggctcaatag
tgattaaatccagtatggccactcaacaactcaaataagaaaatagacatcagttttctt
gctgggcacagacaggtatgaaaacctcttgtttgcatggcctgatggttcacttagcaa
taacctgtgggagaggagttcagtgcataaaagaacttgaggccttcaacaattcaagtg
atcttcaggttttctgtagaggtctgactcttcctttaataataagatacttaaaatgat
atgcaaagtcctctggttatgtatttaggactagtatagctgaatcataggatagttcta
ttttttagctttttgaaagattcacatattgatttccaaagtacagttcattcttaccaa
ggctccctctttccccaTATTCACACCAGCATTTGCT
Primer
(+)TGGAGACATCAGGGATACAA
(+)AGCAAATGCTGGTGTGAATA


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