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Mouse element [ mm2065 ]


Position: chr13:14,811,364-14,816,516 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGAAACTGACATCTGGAATTggctcaatagtgattaaatccagtatggccactcaacaac
tcaaataagaaaatagacatcagttttcttgctgggcacagacaggtatgaaaacctctt
gtttgcatggcctgatggttcacttagcaataacctgtgggagaggagttcagtgcataa
aagaacttgaggccttcaacaattcaagtgatcttcaggttttctgtagaggtctgactc
ttcctttaataataagatacttaaaatgatatgcaaagtcctctggttatgtatttagga
ctagtatagctgaatcataggatagttctattttttagctttttgaaagattcacatatt
gatttccaaagtacagttcattcttaccaaggctccctctttccccatattcacaccagc
atttgctgtcatttttattattcattctgactagggtgagactatcttaaagaagtattg
ttcaatctgtatttttctgatggctaaggatggtgagcaatttttaaagtcattactagt
tatttgtaaatcttggtttgagatttttctcttaagttacatggttcatgtttaattgag
tttttaaaaaatgtttctgtttgttttttaaacattaaaaatcccattctagtctatttc
ctctgcctgatgagttctctggggcacacccagctgccccaagtggcctacattctccct
ggacctccgttgttcagcaccttcatcagacctgatgatctggaaccgcacaggttatat
gtcttttctatacccatttcctctgcctgccaagtccttgggggcacactcagctgccca
gagtgtcctggtagactccaggatttccatttcccaggacctctctgcccaccttcatca
gacctgctgattaaaaccatccaggggtacatctggctgctggaagacttgcaccactgc
tgagttccatttttctgcccaaagatacacaccagagacccgccacacaagaatcattga
aattagactctctctcaatacctgttataacaggaacacccaaggacactcagatggcta
aaggcttacaaaagagcacaatttaaaaaaaaagtgatggaaatatgacaccttgggagc
tatcctactacagcaagccctggatatcctaatacaactgaaacacaagaaaatgatctg
gaatccaatgttatgaagacaataggagccttcaaagaggatatgaataaatcccttaaa
gaaatacataaaaatataatcaaacaggtaaaggaaataagtaaaattgttcaaatagaa
agcaatagggaaatagaagcaatgaggttatcctggagatggaaaacctagggaagagaa
cacatacaacagatataagcatcaccaacagaataaaagaaatggaagaaaagaatctca
ggcatagaagatatggtagaagtaattgatacatcaatcaaaaacaatgtgaaatctaaa
agattcctgacacaaaacatctgagaaatttgggataccatgaaatgacctaacctaaga
atagtaggaatagaagaaggtgaaaatattttcaacaaaaccatagaaaaaaaatgttcc
caacctaatgaaagagatgcctttaaacatacgagaagcattcagaacatcaattagact
tgaccagaaaaaattcctcccaccatataaaaatcaaattactaaatctacagaacaaag
aaaaaatactaaaagatgcaaggggaaaaggtcaggtatcatacaaaggcagacttacca
gaattacacctgacttcttaacacagactgtaagagctagaagggcctgaataacctcta
aatacccacaaatgccaacatagactgctatacccagaaaactccctaaaaccttagatg
gagaaaacaagttatttcaagataaaaccaaatttaaacaatacctatccacaaatttag
ccctacagaaaatactagaagagagactccaaccaaagaggataactacacccccaaaaa
cacagaaaataagtaataatagttaattccataccagcacacacacacacacacacacac
acacacacacacacacacacacacacacaaccaacatcaaaataacaggacgtaacaatc
actgataattacaccagtgactctcaacatcaatggactcaattcccaataaaaagacac
aagctaacagaatggatgtgaaaacatgatccgctattctgctggatacaagaaacatct
cagtaatagatagacattacctcagagtaaaggaaaaattttccaagcaaatggacccaa
gaaataaggtggagtagtcaatttgatatctaaaaacaacatatgctttcaatcaaaaat
gatcaaaggagacagggaaggaaactttatactcatgaaaagaaaagaaaagaaaagaaa
agaaaggaaaggaaaggaaaggaaaggaaaggaaaggaagtctaccaagataatatctca
attttgaatatcttatgtcccaaacacaagggcatctgcatttataaaataaatattgct
aaagcttaagtcacacattgaaccccatacattaatagtgagagatttcaacaccctact
ctcaccaaacaacaggtcatcgagacaaaaactaaagagagaaataatgaaattaaccaa
tggtattggaaatcatattgtattttgattaatctacagaatctacagacagctacagta
tactacttccaaacacaaaagaaaagatcatctttcagtacctcatggatccttctccaa
aattgaccatatactaggtcacaaagcaagcttcaacagatataaaaaaatgtaaataag
tccttgtatcttaacatactactatggattaaagctggacttctgcagcaacagaaataa
gagaaagcctacataggcatggaaactgaacaactctctactcaatgatctctctgtcag
ggaagaaataaggaaagaaattaaagtctttctagaattcaatgaaaataagcgtacagc
ataaccaaacttatgggacactgtgacaacagtgttaagagggaaactcatagatctgag
tgcctccttaaacaatttagaaatttatccagcaatttaaaactacagttgaatgtacta
gaaaaaaaaaagaagaagcaaacacactgaagaggtgtagaaggcaagagatattcaaac
tcagggctgaagtcaatcaattagaaacaaagagaataatgcaaagagtcaaggaaacca
agagctggttctttgagaaaatcaacaagatagacaaacctttagtcaaactaactaaaa
ggaagatagacaatatccaaatacataaaatcagaaatgaaaggaagacataacttcaga
cactgaggaaatgcaaagaattattatctatgctccaaatgcaagggcagccacattcat
taaagacactttagtaaagctcagagcacacattgcacctcacacaaaaatagtgggaga
cttcaacacaccactttcatcaatggacagattgtgaaaacagaaactaaacagggacag
agtgaaactaacagaagtgatgaaacaaacggacttaacagatatctacagaacatttta
tcctaaaacaaaaggatataccttcttctcagcacctcacgggaccttctccaaaattga
ccatataattggtcacaaaacaggcctcaacagatacaaaaatattgagatcgtcccatg
catcctatcagaccaccatggactaaggctgatcttcaataacaacataaataatggaaa
gccaacattcacgtggaaaatgaaaaacactcttctcaatgataccttggtcaaggaagg
aataaagaaagaaattaaagactttttagagtttaatgaaaatgaagccacaacataccc
aaacttatgggacactatgaaagcatttctaagagggaaacaaatagctctgagtgcctc
caaaaagaaactagagagagcacacactagcagcttgacaacacacctaaaagccctaga
aaaaaaggaagcaaattcaaccaagaggagtagaaggcaggaaataatcaaactcagggg
caaaatcagccaactggaaacaagaagaactattcaaagaatcaaccaaaggaggagctg
gttctttgagaaaatcaacaagatagataaacccttagccagactcactagagggcacag
ggacagcatcctaattaacaaaatcagaaatgaaaagggagacataacaacagatcctga
agaaatccaaaacaccatcagatccttctacaaaaggctataatcaacaaaactggaaaa
ccgggacgaaatggacaaatttctagacagataccaggtaccaaagttaaaccaggatca
agttaacgatctaaacagttccatatcccctaaagaaatagaagcaatcattaatagcct
cccaaccaaaaaaagcccaggaccagatgggtttagtgcagagttctatcagaccttcaa
agaagatctaattccagttctgcacaaactattccacaaaatagaaatagagggaactct
acccaactaattctatgaagccacaattactctgatacctaaaccacagaaagatccaac
aaagatagagaacttcagatcaatttcccttatgaatatccatgcaaaaatactcaataa
aattttcgctatccgaatccaagaacacattaaagcaaccatccatcctaaccaagtagg
ttttattccagggatgcagggatggtttaatatacgaaaatccatcaatgtaatccatta
tataaacaaactcaaagccaaaaaccacatgaacatctcgttagatgtggagaaagcatt
tgacaaaatccaacacccaatcatgataaaagtcttggaaagatcaggaattcaaggccc
atacctaactatgataaaagcaatctacagcaaaccagtagccaacatcaaagtaaatag
tgagaagcttgaagcaatcccactaaaatcagggactagacaaggctgcccactttctcc
ctacctattcaacatagtacttgaagtcctatcCAGAGCAATTCTACAGCAAA
Primer
(+)TGAAACTGACATCTGGAATT
(+)TTTGCTGTAGAATTGCTCTG


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