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Mouse element [ mm2063 ]


Position: chr13:14,821,126-14,826,593 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGGGCTACCTCTTCACTTGAttgaagtttctgttagtatgaagaagcctttgaatttcat
gagataggagtgctttaacagaaagattttgtacttgctacttaaacctggtcaaaaaca
tagaactaggatgatgataggctctagaagttttgctaaacaatgatgctgtcgatttgc
tttcaaatttttatgtttttacacagattttttgttgttctcaattttggtcagagaagt
ttgaccaaaccaatgtttggttgactactgggtagcggttaatacagagattcttttttt
ttccatttttattaggtatttagctcatttacatttccaatgctataccaaaagtccccc
atacccacccacccccactcccctacccacccactccccctttttggccctggcattccc
ctgtactggggcatataaagtttgcaagtccaatgggcctctctttccagtgatggccga
ctaggccatcttttgatacatatgcagctagattcaagagctccggggtactggttagtt
cataatgttgttccacctatagggttgcagatccctttagctccttgggtactttctcta
gctcctccattgggagccctgtgatccatccattagctgactatgagcatccacttctgt
gtttgctaggccccggcatagtctcacaagagacagctacatctgggtcctttcgataaa
atcttgctagtgtatgcaatggtgtcagcgtttggatgctgattatggggtggatccctg
gatatggcagtctctacatggtccatcctttcgtctcagctccaaactttgtctctgtaa
ctccttccatgggtgttttgttcccacttctaaggaggggcatagtgtccacacttcagt
cttcatttttcttgagtttcgtgtgtttaggaaattgtatcttatatcttgggtatccta
ggttttgggctaatatccacttatcagtgagtacatattgtgtgagttcctttgtgaatg
tgttacctcactcaggatgatgccctccaggtccatccatttgactaggaatttcataaa
ttcattctttttaatagctgagtagtactccattgtgtagatgtaccacattttctgtat
ccattcctctgttgaggggcatctgggttctttccagcttctggctattataaatgaggc
tgctatgaacatagtggagcatgtgtccttcttaccagttggggcatcttctggatatat
gcccaggagaggtattgctggatcctccggtagtactatgtccaattttctgaggaactg
ccagactgatttccagagtggttgtacaagcctgcaatcccaccaacaatggaggagtgt
tcctctttctccacatccacgccagcatctgctgtcacctaaatttttgatcttagccat
tctgactggtgtgaggtggaatctcagggttgttttgatttgcatttccctgatgattaa
ggatgttgaacattttttcaggtgcttctctgccattcagtattcctcaggtgagaattc
tttgttcagttttgagccccattttttaatggggttatttgattttctgaagtccacctt
cttgagttctttatatatgttggatattattcccctatctgatttaggataggtaaagat
cctttcccaatcaatacagagattcttaagtggtcaaatttccaatggttactaagtgct
cagccgtggatgggccatttatatcatccaatgatcaaaggaatatcactcagaagagga
aaagaaagcacataagagctggcagatgagaagaactctgatatgctggcttctgggatg
gcatggctgctgcacgcattggctcatagtactggtgcttatctgcacaagacctacaca
agatgaacccagttaaagttccagcatgacgggggtgggatgaaacacctgtgggatttg
gcagttgatgtccaagcaaggaaggagtgcattgtgatcctttgggaatatggccactgg
tcggttgtgtcatattcaagcacacatgggcagtactgattgaagtctggaggttactag
tgataataatgaaaataaaagaggataggtaggcagggagatgggatgaggtgaactagg
gatagttggagaaaggtcctggtgggtggataaggtcaaagtacattgcacaaatatttg
aaaattccaaataatgaaaatattatttaaaaaatgacaagaatatacatccaaggcatt
ttaaaactggtttctagctaatgttcaaagaataggtgcacccatgctgctgttttggtc
tgagaaggtgagtgaatggtccattttttttcctttatgtgaattgacatgtatcttcag
aagcacagtcaattccttctggtttaacaaaaacactatgaagctttctataaaagcaag
ttagtttactttctctatgtgggatattatttatgctgatctcaaatgttgctggtaatg
aggtgacagaaacgggtaaatgtttttcctctaacttttaattgcagacacctttactct
ttgaaagattatgacacatgacattgctttggttgtagtataaaaatgaagacatatact
taaattatccaggtgggatcttaattctaatatagtggctaaaattgaggcatcaacata
ctcataaactctactgcatgaataagttaataggtagaatcaggtctggcttgtttctct
gatgcatggctacttcttgcattacttatgatgttactttctttacttgtgccctggcta
aaagtggaggtactgctaagagtccaaaattccaaaacaacccaagcagtcacaagagtt
cagcaaagtaagatctttatttaattaaggcagcaagaactgatcagccagggacaacag
caaagacttgggagctgactgcatccttaaacattcatctcagtaagtacttaagcagat
gccttttttttttttttgtactcaggttgctaccaatcaatcaggactatagagcagact
agagcatacttgggagctgaactgtgacccccaagccaaaatgctatagagtttttaagc
ctgcaatccacaaacatctgtaccaggttatcccaccaatcaggattcagggatagggaa
atatgtctttgtggtatacttatcttgttcccattgattgtgttattcaactgttgtagg
ctgactcatgtctcaacttgccaaccagaatgtcagttacccccagggaggtcttgggga
cttaaactacatttgactgtattcacaatggaagtttgggctgccttgtttagcctcaat
agaaacatagagtcctactgcaacttgatatgccaaggcaggttgatatcttttggaggc
cttcccttctctgaggagaaatggaagggaggataggggaagagaaggtgaaaaggtgga
actgggaggagaggagggagaggaagctgcaatctggatgtaaagaaattaattaatgaa
tgaaaagaaaaaaaaacaaattggaagttttattccttcttacaatacatagttttctct
ttactgaacttctagtgttcacattttataatggactatttaatggaataacttgtttgg
aacttctaaatgaaacataaaaagtttcaatgctatgttaaggagttattctgtattaat
aataactttaggaagacattaatattctagaaattaatactattagaataagaataatga
gctggcatcgatgtgttaggcagtgattatcctgtgttaactgcatctgacattgaaata
cagggcccttgcctggttcaagttaatatgatgcaataagaattcaagggaatttccatt
tagtagtgcatgcctttaatcctagcactctaaaggtagacagataaatctctgtgagct
caaggctagcctggtctacatagtaagttccaggacagccagaactatatagttctgtat
caaaaacaaacaaacaaacaaacaaacaaacaaacaaacagaggaaaaaaaatccctaaa
accgagcaaagtaaaactcaaagaaagaaacaaacagaatccataatggtctaacagttc
cttgtcaggatgacaagtgcttttaatagtagtgattttcagacgattctctccactgaa
aggagacacatgggtggaacacatgtcctaaagtttgactcctggaattcatttccctta
aaagcaggtcaactctattttccctaggaagtctgctaagcaaaggacccctccttcact
attttggaacaaatggactgcaaagagaagcaacctctgtctttgcgactccctttgggg
tgattctgaatttcttttcctccgtgtcagggttcagaaatacgttttgtattctgggaa
acttaatctcaagtttgtcacctctctgggtctttggctttagaaactcctgaccaaaga
ccccagagagtaggcttactggtctttttacttttttttttaactaaaatggtagaaggt
aaactctgcctcctttccttcaggctttgcttttgtcttagttcttttaaaagatttcac
attattgttgaaatttatggcaattggtgagaaaatgaaataattagtactcatgttgat
aaaaaagaaatgtgttataagactctcagaaatgaaaagatgttgatggaaaatattgct
tagttaaatcaattatttttttttactataacaaaaacttgccttacctcatgctttgca
agttgctacaaaatagaattatgttccaatttgattacttacagaattaaaggacatgtg
ccttattcaaattggtcaaagaccttaatatttatgctttcaaaccagatgaaagaagct
ttttacttaaaacagtagctgcactactcagcttgtgtccaaacaccagtgactggggtc
ttgggaaggaagagagaaatattctaaaaatcttttggtctgttttttgcactttgttta
ccaggaagaggaggcccactaccaggctttggaagcttggtgtggctgtacaagatgttt
ttcagggatcattaataacaggtttttaaattttttttttagcttaggactctaaatata
gaccagaatatgaaatggcataaatgccacaatattcaccaaaatgctaattcaataaaa
cagctctacagttgttcataccaaaccagtgtagttatgtattaaccagactgtaagtca
tagttttgcttccaacatatgacacatagaaaatataacatgttcaagtatgtgtagaat
agcatagcatagcatagcatagcatagcatagcatagaataacggaaaagaaatcttaca
gtaacctacaaagtgaatttagtaagatgataagcacagatggtaagcAAAGGCTTAATT
GGCATATC
Primer
(+)TGGGCTACCTCTTCACTTGA
(+)GATATGCCAATTAAGCCTTT


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