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Mouse element [ mm2062 ]


Position: chr13:14,826,153-14,831,453 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TGCACTTTGTTTACCAGGAAgaggaggcccactaccaggctttggaagcttggtgtggct
gtacaagatgtttttcagggatcattaataacaggtttttaaattttttttttagcttag
gactctaaatatagaccagaatatgaaatggcataaatgccacaatattcaccaaaatgc
taattcaataaaacagctctacagttgttcataccaaaccagtgtagttatgtattaacc
agactgtaagtcatagttttgcttccaacatatgacacatagaaaatataacatgttcaa
gtatgtgtagaatagcatagcatagcatagcatagcatagcatagcatagaataacggaa
aagaaatcttacagtaacctacaaagtgaatttagtaagatgataagcacagatggtaag
caaaggcttaattggcatatctgagttggaggttctttttttttttaaattagttattct
ctttatttacattttaaatgttatcccctttcctagtttctcctccaaaaatcccctatc
cccttccccttgctctccaacccacccactcccacttcctggccctggcactctactata
ctggggcatagagccttacagaaccatgggccttgagttggagcttcttgaatatcagag
aaggcatttcctttccctgtatcttctagtaaaaaaaaagaaaagaaaagaaaagaaaag
aaaagaaaagaaaagaataatgaaaaggatccttggatccaacattacatttgttgaata
gaaagatatttgacagtagttgcaccaacacaaaattccttgctttcacagaccattttt
tctagtggataaagtggaccagataagttatccagtacagaagaaggagcaaacagaatg
aaacaataataataaaaaagcaagtggggagatagagatggaacataacaagatttatag
agcaaggtatgtcaaggaaacctgactgcttgagtaacaaatgaccaggcacagaggaaa
attagccagggagacagctacgaaatagataggaaggagcagctgatgcaaaggacctga
ggttgactcacttgggtagttgaggggcaggaaaaggaaaagggcaagtggtatgtttat
gtatgtggtgtcttaagtagtcgagtcttataaaatttcatagtcaaccaagaatggtgc
aataaatagtcgagatttgtttggacactcctggccatctaactatgcaaggttgggtgt
ctcatatccggtacttggctttttgtttggcaaggtttcctgaaggagcactagctcctg
agtaaggtaacttctgtctgtctgtctgtctgttcatctatgcttcagtccttccctctg
ccttttcctttctctccccttctctccattcctccctctctctttcatcaattgtaaaat
ggttcaatatggctttaaaaactatttttagtgttactttccctctatcaatctcttctc
ccctcttgccctcttcctctcccctcaaaacttctttactacaccccagttcccctttca
gtcacctgtgttattccatgccccatttcaaaagatgtcttggccgggcatggtggcgca
cgcctttaatcctagcacccgggaggcagaggcaggcagatttctgagttggaggccagc
ctggcctacaaagtgagttccaggacagccagggctataaagagaaaccctgtctcaaaa
aatcacaccccccctaaaaaaagatgtctttctgtccctatggaacagtttcctggcttt
tacatgtgctccaagttaaacatacatatgacatttgttgttctggatatggactatatc
atccagtataatatttgccagcatctttatttactttaatattttacaacttcatttttc
tttactatataaattccattatatatacataccacatttttattgtctgttcatcagtca
atagacatctaagttattttcaagtactaactcctgtgaataaagcaatagcaaacatgg
gtgagcatgtgtttctatagcagcaattgttttaaaatgttttagtaattctttgaggat
tttgtaaaacgtattttgatcatactcacatgcctcctctaacttttctcagacctatcc
ccacctttcacttttgttttatatctcatcaggtccaatttgtgttgtccaaatattttt
gagtgtgagacctgccctgaaacatggctaacctattaggggctacatttctaaaaacag
gaagaaggaagaaagaaagaaacagagacagagacagagaaggacagaaggaaggaagga
aggaaggaaggaaggaaggaaggaaggaaggaaggaagggagggagggagggagggaggg
agggagggagggagggagggaggaaggaaggaaggaaggaaggaagggatggaggaaggg
agaaagaaaagagaacataacaactagaaaaaccctatctcttcctctcccagaagtttt
catttgccaatagcttatcactgagtgatgacacattgacccccgcccctcctactctcc
tttccccccacactaagattttctttttttacattttgagtttgtgctgctctagtacat
gctatcacaatctctgtgagattatatgtgcacatgccctgttatgtctggaaaaaccct
ttctttgtagacatatactgtaggggttaaatggggtcaggactcaggctgctcagggag
acaggacagaggagttttgattgtgattacccaacactggcgctgggtgggtgggtgttg
ggctatgaggaagcagcagaacactgctctggggctgggggagtggagtttgaggtcccg
gggacgctggagctagctcggggggggggggtggtccctgagcctgcagggaggccaggg
ccatctgggtctcaggctctcgggcactcaggcggagctgggagtcgcggaagagctgag
aatgaagtgggggtccacaggctggatctggcttgggacagaggggagctccagctgggt
cctgaggggaggacacagtccttggcttgttggcaggcagctggcttggcttggtggtcg
tggcagggagcacagagaggccatgtatgggagattagaagtgctctataggcggtgaag
gccttctctatgcctccccacagaggatcctagtgaaaagagacagtccatggttttaag
gaatttattgtcatggcggacaaaaccaaaccccatttctcagggcgggcctgagattaa
gtacctttttcaaggaagaatgtctgggaaggggagtttattggctaagcctccaggcct
tttaggtacctcatttaaatggagatctgtcttgaggctacatgaccacaggtcactgtc
ctctgccagtggaggggcttggggcattgcccttacatgaccgatggccacaaatctatg
tagagcggcggcttgtgtcaagagcctagagtccgagaaccttagcttaaccaggaacca
ggctacctttcacggtcctacaatctaccacatctgacttgtaattttcctaccctttct
tctgtcatgatccccgaggctttgggggagggtgtgataggaatgtcacatttaaggctg
agaactccacggcctctctgattacctatatgttgatcattatggatctctttgttaatt
atcatctactgcaagaagaaacttctctggtaaggaatgtgagatgcactaatctggggg
tggggcagtaagttactaagagttgttttaatattactactgtttactggaataatagtt
ataggttctcccctaggacctatgatctatctaaggacagggcttgactctgataactgt
tccaggcataggctgtaaactcagaggcccaaaatggagggcatacctgtgaggtatcta
tgcgtaatttgaagtgggaagatctactcctaattcagatctttaaggtaggaagacagg
cctttaatacagatctaatctgggccatgccttctggcagtagcctatataaggacatgg
aagaaggaaactgttgccctttgcctgcatgctcttgcctcattagcaagtaccttaatt
ggcattagaaccttcttcttcaggattccagtgtatactaaagaccagctgagacatcca
gccttacggtctgagaaactactggattcttggactttctatttatagccagctttattg
gattggctaggccacagcttgtaaatcatttgaagaaattcctttcctatacagagagat
tcattttatacattcttttactcaagagaaccctgacagatactgatatactctcataac
attcatgccctccttgtattagtagatatatcttgtcagggcagtcattgttgtagttaa
tagcattctcaagtggatatggccaatgatccctcttctacttgccatacataaaacctt
ccggctttatgaactgactagtagacatgaagcttccagatcagcactgacttgattttt
ttttttgtttgttctatgatttaagaatgttatgttttcagcaatagtgtcttatcatca
tcatatgacatcaagtaggggcattgtcacccaattttagggtagcctgatttaaactct
tttgtatacacatatattttaagaagctgctacattaataggcttccatatgagtattcc
aaaggcctttagcgttagctgtgtccctctaccctattttatcacctctattcagccttc
cagtttccccatttcattcaacccttcctcctccattttaatccttccctctttgtaaaa
ctacattctatttcccatcctttgagagacttcttccttgccatggctttctactacata
cctaactcctgtggttatttcaaatgaattgcacaaaggctaacaatgacaaatgaaagg
aaacatgacgtatttgtctttctgagtttgaactattttactcaggataattgcttctat
tcctaccctttttgcttcttatttcacaatttcatttttcttaacagctactaattcatt
gtgtaaatctactgtatgttcctcataggttcatgagttgatggacatctaaactactta
aatttcatagctgttgagaatagaacagaagtgacttagatgagcaatcatctcaagata
caaactccttcagctatatacctaagaatggtatagctggtccctgtggtagatatattt
tTAGCTTTCTGAGGAACTGCC
Primer
(+)TGCACTTTGTTTACCAGGAA
(+)GGCAGTTCCTCAGAAAGCTA


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