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Mouse element [ mm2060 ]


Position: chr13:14,870,188-14,875,363 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
GTTCTCCATACCCCAAAATTcatgtttgcaatatagctttctatccacaaagacttgatg
cattctactgacagctttaaaaaatttttttaatatccaacacaatatttttattgatca
tttgggatttttacataatttattccattccattcacttcccagtcctctcaggcccgcc
tcccaatccttgacaccgccaccaccaccctccccagaataaaaagaaagatagaaaaaa
gtaccaagtctattttggctgcccatattttcactggagcatagtcagactcccagtggc
cagccccctataattttaacactgagtccttctccatgcccaccagaaaccatcaactgc
gaagggctaacttcagcatctctatcacaatttttaagagttctctaaaatagcttcctc
tctagattatttcttttggagaggtgagagaggtggtgaagagattgtcacagaaaccta
tggctctcagtctcaactgtgagtctgctgtcatcactaccactgcagaagaagcttccc
tgccttttacagtcaccagcagcacagatcatgaatttcacatggtttctggtgacagca
tggacaatggacatccacatggcttccagtggcagtacagaccatggatatccacatggc
ccatgacctatggtcacagcatagaccacagacactatcatgtccctccatggcaacaca
ggttacaggcatcaacatggcttcagcagagatcaagggcatctatgtggccttcagtgg
taacaaggaccacagtcatcaacagagttctccttattcagtaatgccatgttctttgtc
cgaggccacgatcctgtgttgctttcatacccttcattgcctagtctgttttcttgccac
tcacctctgctctttacagtttcatatgtccactttttaaaagcatcttcccataggatc
tactatttttcagttgtccaagggttcttcagcctctgcagagtcctgttctggcaccta
gcctcccttcaaagccttgatgggtctccaagctccttggagctgctcagcaatctctca
gaggatgccaggggccaccaccatcttcgatcacagccatgcatcaaatttcatcttcaa
tagcaatggcatgctcccagatcactgggagtgctccagacactcaagtagctactagat
ggagtagacaatggggtggacttactcaaagcattggatcttggccagattggtcaattg
ctgctggtgattcatggtgcaggtgcagcacccacgctcagagctgtgcagcacccctga
tttaaacagcttaagtatctcaatcagatatagttgagaaccaaggtgtagttcattctg
taatacatttttaccagttgtgaggatggcagctcacaaccttctgtttctccagttgcc
ctcttctggcccttgtggccaccacacacatcatacacgaaaggatggaccatctagaga
ctgccatatccagggatccaccccataatcaccttccaaatgctgacaccattgcataca
ctagcaagatttcgctgaaaggacccagatatagctgtttcttgtgagactaggtcgggg
cctagcaaacacagaagtggatgctcacagtcagctattggatggatcacagggctccca
atggaggagctagagaaagtacccaacgagctaaagggatctgcaaccttataggtggaa
caacattatgaactaaccagtaccccggagctcttgactctagctgcatatgtatcaaaa
gatggcctagtcggccatcactggaaagagaggcccattggacttgcaaactttatatgc
cccagtacaggggaacgccagggccaaaaaaatgggaatgggtgggtagggaagtggggg
ggagggcatgggggacttttggtatagcattggaaatgtaattgaggaaaatacgtaata
aaaaatattaaaaattcaaaaaattctgattcttccgatggcgaatacttgccgatctac
catgatagcaggaaattctagcagttttatcttagcccttctgtccccattccaaatagc
atattttcattttcaagtggttattaattggagacaacttctaggtcagggatggggagt
gtgtccacttctcctttcagctccaggactccacaagtgcaccctgtgcagaatgtgtgg
atgttggctcagtctctgtggattttaatgaactttgatcatgttgatttagagggtttg
ttttcttggtgtcttctatctcttctgactctttctgccttctccttcatggaggtccat
gaaccccaagtggaggaattggatggagacaacttgtttagggctaaaaattccaaggtt
tcttactcagcgcaaaatgtctctatgtgggtctctgtgtttgttcccatttgctgaagg
agtaagctgctctcatgatggctgagcaaggcacttatctttgagtatagaaggatgtca
ttagaagtcattttattgctactttttttgggcgctgtagtgattggtttatcctaggtc
ccaaggctatctagtctcaggttcttgatcatctaagaagcagtgtctagtgtagattct
atcttgtggagtgggcatttcttgcgcacgctcaactggccaaaagaacgatgctgcaac
aggatccttctgcacacgtttattcagtcctgtttcttcttgtttatatctcccttgttt
atatctcccttgtttatatctcccctgaaccctgggcctctcactcttttatactctcag
ttcccatccactcacagcaggccacgccacctcaccaggcacacagtttcagctaatcag
ggcagcaggggcatatctccatcaaaatgcattcacctgtatcctggtacacctgcgcag
ctctcaagatgtttgtggcttttatgaggaagtcaggtgcaagtcatatgacttagctgc
agtccctggtgcctttgggactgccgccacacctgctcctcacatctcccccttttttct
tttctttttttttttttttggcagagagaatgtctgtagatagccccctgcagccatgcc
ccttacccatccttgggagacaaacagcattggtttgatccctgtcttaggttggtgaca
tgcccagggagtcttatcactgactacctctctatcatgccaagccacacctggggagat
tgtgttttgcttgcggcaggtgcatcaaaaggccaggatgttgattaatctatggccaga
tcttaattgctgcaagcaagcctcatgggtgaaggtagaggtctgatccccagtgtgcaa
gcataggggccctacacaaaaccatcccttgggctcatcacccagagaggtcttggccag
ctcccgtgtcgtttttcctgggggaagggaactaggacactgaaccttcatgcaatcaga
catgccttccacaggatgccaacagcaagctatcctctgtgcagtgcttagcctcgcacc
ccacggcataacacagcattatttcttttagagcagcaaaccgaatctgaggagattgtc
ctgcctccactgcagcaaaagcctacgctaccatggcgaaagtgcgggcccgcatactct
gcacctaacacatgtgccaaacacaacacacacactataacaagcatacattccagggct
ctcatccccactcatcttccctgaagcaagggatagatagccagaggtgctatctcttta
aggggaattcagggatcaaaaaggcatgggaaaatttgaatgtcatgtcgagctggtatt
ggcttctggaacaccaaaaggatctcccatctcggctccatcgtttgtgcttgtgggacc
atccaccacatccacaggggcaactggatcaggggccttattcttgcagcgtctcaccaa
cctctccggtacccaaagaggttctgtctggtcttgtggaaacacacaaacagaccctct
ctcccaaaccaattgagagcgctcctctcttacctgattcagcacctaattgcctctctg
gagttctgcaacaccatcaacaccggtaggcaatgatttccacacccttatggcaatctg
attcacctgctcaaacacctgcagtggatatcctgtttgttgttgtgcaaattgaccttg
accaagcagcatatccctatcccatgctggatttcctgcagcaacgttagccactgcctg
ttcatttgtaaattcaataaggaaggctttccaatctaaatactgcccaggtgaaaggca
tgccttcaccaagcctgtccaatcggatggcgtcatgcagtctctattcaaggcctctac
ttgagccacactataggaagcacttaggccgtatgtccgcacggactcagccaaattcct
gattactttgaaatctagaggctcatgatatctctgccctgcttggttggtgaaaatagg
acatcccagcaaggagagtctaacctttctccaaacctctggacagaaggtccacctata
ggcggctgctgaggaggcatagggagaggatgcagaagctaatttgccttcctcctctgc
cttggctcttttattttgtcctttctgtccacctgataacactgtctctactttcttctt
cctttttctttttaagcccttctcctctttgacatactctcttgttgctctataaggatt
ttctgacctgtcttgactgcctctacacacagtttcaaacagtaacagagtccatatatc
agaacaaacaagaccaaaactatcagacctacccacaaagggtcaatgggagaaaaaaag
cataactacacagcgaggatctcttgatcactacactgaggttatcatagttccttaact
tgtcccaaagccgggaaccttatcgttactttgtgcctgcttcctggaaactttatactt
gcctctattttatccgaggtccttcccaaactcctggggtcacaagtttcacttaccttg
aacttaccctgccggcaaccactgactgctgaaagttctgaactcggtgggggagtcggt
cccccatacgggccaccaattgtcgcgtccactctcgaccagtaagaacgacgcgaCCAC
CAGTCCTTCTAACAGC
Primer
(+)GTTCTCCATACCCCAAAATT
(+)GCTGTTAGAAGGACTGGTGG


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