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Mouse element [ mm2057 ]


Position: chr13:14,899,640-14,904,761 (UCSC browser)
Source: Lawrence Berkeley National Laboratory

Flanking genes: AW209491 - Gli3

Timepoints:
e11.5

This sequence did not show observable enhancer activities at E11.5
We define a negative enhancer at this developmental stage when at least 3 transgenics were obtained and yet no reproducible pattern of expression was observed. This does not mean that this sequence is not an enhancer at another time point or a weak enhancer at this time point but below the detectable range at our level of resolution.


Fasta sequence
TCCGTCCTTGTATTGCTTCTTTtctgttattatcctttgaagggctggattcgtggaaag
atattgtgtgaacttggttttgtcgtggaatactttggtttctccatctatggtaattga
gagtttggccgggtatagtagcctgggctggcatttgtgttctcttagtgtctgtataac
atctgtccaggctcttctggctttcatagtctctggtgaaaagtctggtgtaattctgat
aggccttcctttatatgttacttgacctttctcccttactgcttttaatattctatcttt
atttagtgcatttgttgttctgattattatgtgtcgggaggaatttcttttctggtccag
tctatttggagttctgtatgcttcttgtatgatcatgggcatctctttttttatgtttgg
gaagttttcttctattattttgttgaagatattagctggccctttaagttgaaaatcttc
attctcatcaattcctattatccgtaggtttggtcttctcattgtgtcctggattacctg
gatgttttgagttaggatccttttgcattttgtattttctttgactgttgtgtcgatgtt
ctctatggaatcttctgtacctgagattctctcttccatttcttgtattctgttgctgat
gctcgcatctatggttccagatctctttcctagggtttctatctccagcgttgcctcgct
ttgggttttctttattgtgtctacttccctttttagttctagtatggttttgttcatttc
catcacctgtttggctgtgttttcctgcttttctttaagagcctgtaactctttagcagt
gctctcctgtaaatctttaagtgacttatgaaagtccttcttgatgtcctctatcatcat
catgagaaatgtttttaaatctgggtctagattttcggttgtgttggggtgcccaggact
aggtggggtgggagtgctgcgttctgatgatggtgagtggtcttgatttctgttagtagg
attcttacgtttgcctttcgccatctggtaatctctgaagctagctgttttagttgtcac
tgttaagagcttgttcttcaggtgactctgttagcctctatgagcagacctggagggtag
cactctccttagtttcagtgggcagagtattctctgcaggcaagctctcttcttgcaagg
caggtacccagatatctggtgttcgaaccagactcctggcagaagttgtgttccactcac
tagaggtcttaggatcacgtgtggaatcctgtgtgggcccttgcgggtgtcaggcgactc
agctggcaaggtagccagggctcgagtggagtggaaggggtttgtgccccagatcaagcc
cgggtagcctgcttccctatgtaccgcagtctcaagttccacgcgatttgattggggtag
gcgctgtgttccactcaccagaggtcttagggtcccgtggggagtcccgtgtgggccctt
gcgggtgttgggcaagactctgctgtcaaggtagcccggggctcgagtctcgagtggagc
ggaagggacttgtgccccagatcaggcccgggtagcctgcttccctatgtactgcagtct
caagttccgcgcgattggattggggcaggcactgtgatccactcaccagaggtcttaggg
tcccgtggggagtcccgtgtggacccttgcgggtgttgggcaagactctgctggcaaggt
agcccggggctcgagtctcgagtggagcggaagggacttgtgccccagatcaggcccggg
tagcctgcttccctatgtaccgcagtctcgagttccgcgcgattggattggggcaggcac
tgtgatccactcaccagaggtcttagggtcccgtggggagtcctgtgtggacccttgcgg
gtgttgggcaagactctgctggcaaggtagcccggggctcgagtcccgagtcgagcggaa
gggacttgtgccccagatcaggcccgggtagcctgcttccctatgtaccgcagtctcaag
ttccgcgcgattggattggggcaggcactgtgatccactcaccagaggtcttagggtccc
gtggggagtcccgtgtggacccttgcgggtgttgggcaagactctgctggcaaggtagcc
cggggctcgagtctcgagtggagcggaagggacttgtgccccagatcaggcccgggtagc
ctgcttccctatgtaccgcagtctcgagttccgcgcgattggattggggcaggcactgtg
atccactcaccagaggtcttagggtcccgtggggagtcctgtgtggacccttgcgggtgt
tgggcaagactctgctggcaaggtagcccggggctcgagtctcgagtcgagcggaagggc
aaaggttgaactcttaaacattggccttgctaggtcacttaatgcttcagccatcagggg
ccagggtcagctcttttactgtcatgccgccaggggtggtcacccacacccacaccacta
gtgccagctctactgtgttgcccaggtaaggtacagggcacactctccagagtgctgcaa
ccaatgaggggcagggatagttttctacgtctcataatcttggggccagctctccagact
actaaacgtgatgaggggcatgggtaggagtaggaggaaggtatcacccaaacccatgca
cctcatagcagatgagtgttggagctagctctcgtgtggtcctgcccttggggccagctt
acctgtgcccctgtcactagggccaactctactgtgttgcccagggaaggtgcagggcac
actcaccagagtgctgcagccagtgaggaacatggacctctcttctgctctcatgaccca
ggggccaggtctcctgatgtctgcagatggagagggctgaggagaggatggagatcacca
cttctgtgcctcttggcagttgagtgggggagggagcagctctcacaagctcacaccttt
agggccagctctccaaatgtgctgttcaggcaaggtgcagggtctgctctccaaagtgat
gcagatggggagaggtgggaccagctatgaacaacccttgtacatctatgtggttctaga
cagcagcccagaccagggatgtccacacggtctttggtggtaatatgaaccacagacatt
aagacagacccattttgctgcatgacaatggtcccagacatgacccttagcagcagcact
ggctgggacttcatcatgacctcaaaaggcaagggttaatactcataacaggcaattcct
ctctaccctcgctccagttcatctctcttcataatgctcagactgtcctgcctttctttc
tctcccatctgttcatcacatacttgcacattgtagtggctcctactgcaggcctctagg
tgtcttttgatcacctgcaccactgtgtggcctgggatggatccccgggtatggtagtct
ctagatggtccatccttttgcctcagctccaaactttgtctctgtaactccttccatggg
tgttttgttcccaattctaagaaggggcaaagtatccacacttcggtctttgttcttctt
gagtttcatgtgttttgcagattgtatcttgtatcttgggtattctaagtttctgggcta
atatccacttatcagtgagtacatatcatgtgagttcttttgtgattgggttacctcact
caggatgatgccctccaggtcaaaccatttgcctaggaatttcataaattcattcttttt
aatagctgagtagtactccattgtgtaaatgtaccacattttctgtatccattcctctgt
tgagggacatctggttttttccagcttctggctattataaataaggctgctatgaacaaa
ggaccctgatatagctgtctcttgtgaggctatgccggggcctagcaaacacagaagtgg
atgatagtgaaatgccagggccaagaagtgggagtaggtgggtaggggagtgggggcgac
ggtatgagggacatttgggatagcattggaaatataaatgaagaaaatacctatttaaaa
aaagaagaagaataaaaaaacacaaagaaaactgaaaaaaagttcttatttctttagtca
gtagtggccattttatacaattcaagatatcagtatattgagatttttttattgtttact
ttttctttccacgtcttttgcctttagaaacttaatttatattcatgacactttcatttt
tagcaatagtttcattgattcctcaagaatttcataaatttttaatatattcaacctcct
ctacttacctcctccattactcccccttcactctcctatgccatctaatcaaatttgaga
agtctttttttgttgtttgttttttctctcttttcttattgagtttagtttgtgttgcct
ggttagtcttgggagtgaagtcttccttggtgtgtgattgactactaggagtcacatcat
taaaaacaaaacacacacacagagagagagagagagagagagagagagagagagagagag
agagagagagagagagagagagagaaagagagagagagagaggaggagagagagaggagg
aggagagagagaggaggagagagagagaggaggaggagagagagaaggaggaggagagaa
agaggaggagagagagaggaggaggaggagggaaagagagagagagagagagagagagag
agagagagagagagagaaagagagagagactttccctctctcatcagccattaaatacca
gaacctccttggttagtgttggtatttcagtatcaccttccctgggtctgtatcagacag
gattttgtctagctagagtcttcgaagctttggtccatgctgtcaaatttgtgtggtcat
ctatcctgttatgtctagaaaatactgttctatatatttttgagtacctctggcttttct
aatctttctgttcccccttccattacaatcctgaagtctagtggagaagggcgggatata
aacatcaagtttggggtgagcatgccacatgattttactctttgcatgttgaccagttgg
AGTCCCCTTCTACTGAAAAGGG
Primer
(+)TCCGTCCTTGTATTGCTTCTTT
(+)CCCTTTTCAGTAGAAGGGGACT


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